Search result

BaseInfo

ncRNA ID novel_zma_miR10343
Species Zea mays
Class miRNA
Genome position Chr2:211183974-211184099 [+]
Reference genome RefGen_v4
Source SRR5099742;SRR5100248
Length 21
Mature sequence(if miRNA) 106 - CGAGAUAACCGAACAGACCCU - 126
Stem-loop(if miRNA) --              CA     ACGA    --A     U      -----      ----C    ACU
  GGUCUGUUCGGUUA  UCGGA    GACC   GGAAC GUUCUA     GAUGAU     AAUU   A
  ||||||||||||||  |||||    ||||   ||||| ||||||     ||||||     ||||
  CCAGACAAGCCAAU  AGCCU    UUGG   CCUUG UAAGGU     UUACUA     UUAG   U
UC              AG     -AAG    AGA     U      GAACC      UCAAA    AUA
Stem-loop sequence GGUCUGUUCGGUUACAUCGGAACGAGACCAGGAACUGUUCUAGAUGAUCAAUUACUAUAUAGAUUAAACUAUCAUUCCAAGUGGAAUUGUUCCAGAGGUUGAAUCCGAGAUAACCGAACAGACCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ092043.1
ncRNA:21   UCCCAGACAAGCCAAUAGAGC   1
  ||||||||||||||||*|||*
targets:67   AGGGUCUGUUCGGUUAGCUCC   87

2.5 TSA: Zea mays contig27692, mRNA sequence NA coding protein psRNATarget
BT018592.1
ncRNA:21   UCCCAGACAAGCCAAUAGAGC   1
  ||||*=||||||||||||||*
targets:1006   AGGGCUUGUUCGGUUAUCUCU   1026

3.0 Zea mays clone EL01N0447E06.d mRNA sequence NA coding protein psRNATarget