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BaseInfo

ncRNA ID	novel_zma_miR10342
Species	Zea mays
Class	miRNA
Genome position	Chr2:206061247-206061333 [+]
Reference genome	RefGen_v4
Source	SRR5099742;SRR5105959;SRR5105961
Length	21
Mature sequence(if miRNA)	1 - ACCGGAGGGGAUUGGAGAGGC - 21
Stem-loop(if miRNA)	--    G -  GG  U  A A     A          UU     A   ACCG A GG  AU GG G GGCUA AAUCCCUCUC  AUUCA A   |||| | ||  || || | ||||| ||||||||||  |||||   UGGU U CC  UA CC C CCGAU UUAGGGGGAG  UAAGU A UU    G A  UU  U  - -     C          UU     U
Stem-loop sequence	ACCGGAGGGGAUUGGAGAGGCUAAAAUCCCUCUCUUAUUCAAAAUUGAAUUUGAGGGGGAUUCUAGCCCCCUAUUUCCAUGUGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ066710.1	ncRNA:21   CGGAGAGGUUAGGGGAGGCCA   1   |==|||||||||||=|||||| targets:62   GUUUCUCCAAUCCCUUCCGGU   82 Target Full Sequence	2.5	TSA: Zea mays contig02344, mRNA sequence	NA	coding protein	psRNATarget
BT065189.1	ncRNA:21   CGGAGAGGUUAGGGGAGGCCA   1   |==|||||||||||=|||||| targets:935   GUUUCUCCAAUCCCUUCCGGU   955 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0026F18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156624.1	ncRNA:21   CGGAGAGGUUAGGGGAGGCCA   1   |==|||||||||||=|||||| targets:1056   GUUUCUCCAAUCCCUUCCGGU   1076 Target Full Sequence	2.5	Zea mays uncharacterized LOC100283725 (gpm911), mRNA	NA	coding protein	psRNATarget
EU965698.1	ncRNA:21   CGGAGAGGUUAGGGGAGGCCA   1   |==|||||||||||=|||||| targets:1056   GUUUCUCCAAUCCCUUCCGGU   1076 Target Full Sequence	2.5	Zea mays clone 288085 nuclear cap-binding protein subunit 2 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553374.1	ncRNA:21   CGGAGAGGUUAGGGGAGGCCA   1   |==|||||||||||=|||||| targets:1263   GUUUCUCCAAUCCCUUCCGGU   1283 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100283725 (gpm911), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:21   CGGAGAGGUUAGGGGAGGCCA   1   |||*||||||||||||||||| targets:3502   GCCCCUCCAAUCCCCUCCGGU   3522 Target Full Sequence	1.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   CGGAGAGGUUAGGGGAGGCCA   1   |||*||||||||||||||||| targets:3537   GCCCCUCCAAUCCCCUCCGGU   3557 Target Full Sequence	1.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008664337.2	ncRNA:21   CGGAGAGGUUAGGGGAGGCCA   1   *=|||||||||||=||||||| targets:2086   UUCUCUCCAAUCCUCUCCGGU   2106 Target Full Sequence	1.5	PREDICTED: Zea mays ABC transporter F family member 1 (LOC103640881), mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:21   CGGAGAGGUUAGGGGAGGCCA   1   |||*||=|||||||||||||| targets:1115   GCCCCUUCAAUCCCCUCCGGU   1135 Target Full Sequence	2.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:21   CGGAGAGGUUAGGGGAGGCCA   1   *||*||||||||||||||||| targets:1033   ACCCCUCCAAUCCCCUCCGGU   1053 Target Full Sequence	1.0	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
BT065170.1	ncRNA:21   CGGAGAGGUUAGGGGAGGCCA   1   *||*||||||||||||||||* targets:686   UCCCCUCCAAUCCCCUCCGGG   706 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:21   CGGAGAGGUUAGGGGAGGCCA   1   *||*||||||||||||||||* targets:1566   UCCCCUCCAAUCCCCUCCGGG   1586 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:21   CGGAGAGGUUAGGGGAGGCCA   1   *||*||||||||||||||||* targets:1586   UCCCCUCCAAUCCCCUCCGGG   1606 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:21   CGGAGAGGUUAGGGGAGGCCA   1   *||*||||||||||||||||* targets:1610   UCCCCUCCAAUCCCCUCCGGG   1630 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:21   CGGAGAGGUUAGGGGAGGCCA   1   *||*||||||||||||||||* targets:1643   UCCCCUCCAAUCCCCUCCGGG   1663 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020543656.1	ncRNA:21   CGGAGAGGUUAGGGGAGGCCA   1   *||||*||*|||||||||||| targets:148   CCCUCGCCCAUCCCCUCCGGU   168 Target Full Sequence	2.5	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942143), partial mRNA	NA	coding protein	psRNATarget
NM_001176162.1	ncRNA:21   CGGAGAGGUUAGGGGAGGCCA   1   *||||*||*|||||||||||| targets:324   CCCUCGCCCAUCCCCUCCGGU   344 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383514 (LOC100383514), mRNA	NA	coding protein	psRNATarget
BT067454.1	ncRNA:21   CGGAGAGGUUAGGGGAGGCCA   1   *||||*||*|||||||||||| targets:324   CCCUCGCCCAUCCCCUCCGGU   344 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0055N21 mRNA, complete cds	NA	coding protein	psRNATarget