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BaseInfo

ncRNA ID novel_zma_miR10340
Species Zea mays
Class miRNA
Genome position Chr2:194433648-194433739 [+]
Reference genome RefGen_v4
Source SRR5099742
Length 23
Mature sequence(if miRNA) 1 - UUGGCUUUUGUAGAUAUGUUGCU - 23
Stem-loop(if miRNA) --   GC                C          CAC         
  UUG  UUUUGUAGAUAUGUUG UUUUGCUAUG   UUAGAUAUAC
  |||  |||||||||||||||| ||||||||||   |||||||||G
  AAC  AAAAUAUCUAUAUAAC AAAACGAUAC   GAUCUGUAUC
AA   UA                -          AUA         
Stem-loop sequence UUGGCUUUUGUAGAUAUGUUGCUUUUGCUAUGCACUUAGAUAUACGCUAUGUCUAGAUACAUAGCAAAACAAUAUAUCUAUAAAAAUCAAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU975533.1
ncRNA:23   UCGUUGUAUAGAUGUUUUCGGUU   1
  |*|||=|||||||*|||||||||
targets:1325   AACAAUAUAUCUAGAAAAGCCAA   1347

2.5 Zea mays clone 491846 EMB1374 mRNA, complete cds NA coding protein psRNATarget
NM_001158974.1
ncRNA:23   UCGUUGUAUAGAUGUUUUCGGUU   1
  |*|||=|||||||*|||||||||
targets:1325   AACAAUAUAUCUAGAAAAGCCAA   1347

2.5 Zea mays EMB1374 isoform 1 (TIDP3564), mRNA NA coding protein psRNATarget