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BaseInfo

ncRNA ID novel_zma_miR10338
Species Zea mays
Class miRNA
Genome position Chr2:188540671-188540752 [+]
Reference genome RefGen_v4
Source SRR5099742;SRR5105959;SRR5105961
Length 24
Mature sequence(if miRNA) 1 - ACAUAUCUAAUUAUGGGUCGUGCU - 24
Stem-loop(if miRNA) --     U      A              CCA  A  -  UGC
  ACAUA CUAAUU UGGGUCGUGCUGUG   GC CG UG   C
  ||||| |||||| ||||||||||||||   || || ||
  UGUAU GAUUAA ACCCGGCACGGCAC   CG GC AC   C
UG     U      C              --C  -  U  UGA
Stem-loop sequence ACAUAUCUAAUUAUGGGUCGUGCUGUGCCAGCACGUGUGCCCAGUCAUCGGCCCACGGCACGGCCCACAAUUAGUUAUGUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020547541.1
ncRNA:24   UCGUGCUGGGUAUUAAUCUAUACA   1
  =|||||=|||||||||||||||||
targets:3394   GGCACGGCCCAUAAUUAGAUAUGU   3417

1.0 PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA NA coding protein psRNATarget