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BaseInfo

ncRNA ID	novel_zma_miR10333
Species	Zea mays
Class	miRNA
Genome position	Chr2:160468728-160468849 [+]
Reference genome	RefGen_v4
Source	SRR5099742
Length	24
Mature sequence(if miRNA)	99 - AUCCUUGAUCACCAAAUCAGCCCU - 122
Stem-loop(if miRNA)	--                      AA             GG          CA   A    U   GGCUGAUUUGGUGAUCAGGGAU  CGAGGGGAUCCAU  GGGAGGAAUC  CUU UUAU U   ||||||||||||||||||||||  |||||||||||||  ||||||||||  ||| ||||   CCGACUAAACCACUAGUUCCUA  GCUCCCCUAGGUA  CCCUCCUUAG  GAA AAUA G UC                      GG             --          AG   C    A
Stem-loop sequence	GGCUGAUUUGGUGAUCAGGGAUAACGAGGGGAUCCAUGGGGGAGGAAUCCACUUAUUAUUUGAAUAACAAGGAGAUUCCUCCCAUGGAUCCCCUCGGGAUCCUUGAUCACCAAAUCAGCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ242114.1	ncRNA:24   UCCCGACUAAACCACUAGUUCCUA   1   |||||||||||||||||||=|||| targets:15   AGGGCUGAUUUGGUGAUCAGGGAU   38 Target Full Sequence	1.5	Sequence 8109 from Patent EP2985353	NA	coding protein	psRNATarget
HI409984.1	ncRNA:24   UCCCGACUAAACCACUAGUUCCUA   1   |||||||||||||||||||=|||| targets:15   AGGGCUGAUUUGGUGAUCAGGGAU   38 Target Full Sequence	1.5	Sequence 8109 from Patent EP2074227	NA	coding protein	psRNATarget
JB170445.1	ncRNA:24   UCCCGACUAAACCACUAGUUCCUA   1   |||||||||||||||||||=|||| targets:15   AGGGCUGAUUUGGUGAUCAGGGAU   38 Target Full Sequence	1.5	Sequence 8109 from Patent EP2559767	NA	coding protein	psRNATarget
EU941266.1	ncRNA:24   UCCCGACUAAACCACUAGUUCCUA   1   ||||||||||||||||||=||||| targets:590   AGGGCUGAUUUGGUGAUCGAGGAU   613 Target Full Sequence	1.5	Zea mays clone 1435213 mRNA sequence	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:24   UCCCGACUAAACCACUAGUUCCUA   1   |||||||||||||||||||=|||| targets:916   AGGGCUGAUUUGGUGAUCAGGGAU   939 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:24   UCCCGACUAAACCACUAGUUCCUA   1   |||||||||||||||||||=|||| targets:916   AGGGCUGAUUUGGUGAUCAGGGAU   939 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
EZ070120.1	ncRNA:24   UCCC--GACUAAACCACUAGUUCCUA   1   *|||--=||||*||*||||||||||| targets:49   UGGGACUUGAUGUGUUGAUCAAGGAU   74 Target Full Sequence	2.5	TSA: Zea mays contig05757, mRNA sequence	NA	coding protein	psRNATarget
EZ049969.1	ncRNA:24   UCCC--GACUAAACCACUAGUUCCUA   1   *|||--=||||*||*||||||||||| targets:99   UGGGACUUGAUGUGCUGAUCAAGGAU   124 Target Full Sequence	2.5	TSA: Zea mays contig51087, mRNA sequence	NA	coding protein	psRNATarget
EU945036.1	ncRNA:24   UCCC--GACUAAACCACUAGUUCCUA   1   *|||--=||||*||*||||||||||| targets:407   UGGGACUUGAUGUGCUGAUCAAGGAU   432 Target Full Sequence	2.5	Zea mays clone 238916 mRNA sequence	NA	coding protein	psRNATarget
NM_001149916.1	ncRNA:24   UCCC--GACUAAACCACUAGUUCCUA   1   *|||--=||||*||*||||||||||| targets:533   UGGGACUUGAUGUGCUGAUCAAGGAU   558 Target Full Sequence	2.5	Zea mays putative plastid-lipid-associated protein 13 chloroplastic (LOC100276026), mRNA	NA	coding protein	psRNATarget