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BaseInfo

ncRNA ID	novel_zma_miR10310
Species	Zea mays
Class	miRNA
Genome position	Chr10:120198224-120198356 [-]
Reference genome	RefGen_v4
Source	SRR5099742
Length	24
Mature sequence(if miRNA)	1 - AUUCCAUGUCCACCAAAUCAGCCU - 24
Stem-loop(if miRNA)	-GA                          U   C GUACCAUA    A U    U          CAA    CUGGUUUGGUGGAUAUGGAAUUGGAG GGA C        GGAG G AAUC UCUUCUUAUU   A    |||||||||||||||||||||||||| ||| |        |||| | |||| ||||||||||    GACUAAACCACCUGUACCUUAAUCUC CCU G        CCUC C UUAG AGAGGGAUAA   U UCC                          U   A --AUACAC    - -    U          AUU
Stem-loop sequence	GACUGGUUUGGUGGAUAUGGAAUUGGAGUGGACCGUACCAUAGGAGAGUAAUCUUCUUCUUAUUCAAAUUUAAAUAGGGAGAUGAUUCCUCCCACAUAGAUCCUCUCUAAUUCCAUGUCCACCAAAUCAGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001137974.1	ncRNA:24   UCCGACUAAACCACCUGUACCUUA   1   =|||||||||||||||=||||||| targets:732   GGGCUGAUUUGGUGGAUAUGGAAU   755 Target Full Sequence	1.5	Zea mays 60S ribosomal protein L22-2 (LOC100192778), mRNA	NA	coding protein	psRNATarget
BT034847.1	ncRNA:24   UCCGACUAAACCACCUGUACCUUA   1   =|||||||||||||||=||||||| targets:732   GGGCUGAUUUGGUGGAUAUGGAAU   755 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0022M13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020552919.1	ncRNA:24   UCCGACUAAACCACCUGUACCUUA   1   =|||||=||||||||||||||||| targets:1500   GGGCUGGUUUGGUGGACAUGGAAU   1523 Target Full Sequence	1.0	PREDICTED: Zea mays negative regulator of systemic acquired resistance SNI1 (LOC103654875), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020552918.1	ncRNA:24   UCCGACUAAACCACCUGUACCUUA   1   =|||||=||||||||||||||||| targets:2153   GGGCUGGUUUGGUGGACAUGGAAU   2176 Target Full Sequence	1.0	PREDICTED: Zea mays negative regulator of systemic acquired resistance SNI1 (LOC103654875), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU942647.1	ncRNA:24   UC-CGACUAAACCACCUGUACCUUA   1   ||-|||||||||||||||||||||| targets:427   AGAGCUGAUUUGGUGGACAUGGAAU   451 Target Full Sequence	0.0	Zea mays clone 1526747 mRNA sequence	NA	coding protein	psRNATarget
LQ235127.1	ncRNA:24   UC-CGACUAAACCACCUGUACCUUA   1   ||-||||||||||||||||*||||| targets:2   AGAGCUGAUUUGGUGGACAGGGAAU   26 Target Full Sequence	1.5	Sequence 1122 from Patent EP2985353	NA	coding protein	psRNATarget
JB163458.1	ncRNA:24   UC-CGACUAAACCACCUGUACCUUA   1   ||-||||||||||||||||*||||| targets:2   AGAGCUGAUUUGGUGGACAGGGAAU   26 Target Full Sequence	1.5	Sequence 1122 from Patent EP2559767	NA	coding protein	psRNATarget
HI402997.1	ncRNA:24   UC-CGACUAAACCACCUGUACCUUA   1   ||-||||||||||||||||*||||| targets:2   AGAGCUGAUUUGGUGGACAGGGAAU   26 Target Full Sequence	1.5	Sequence 1122 from Patent EP2074227	NA	coding protein	psRNATarget