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BaseInfo

ncRNA ID novel_zma_miR10309
Species Zea mays
Class miRNA
Genome position Chr1:60211871-60211918 [-]
Reference genome RefGen_v4
Source SRR5099742
Length 22
Mature sequence(if miRNA) 27 - UAAUUUCCACUGGCGGUUUUCU - 48
Stem-loop(if miRNA) --UA                  CU
    AUUUCCACUGGCGGUUUU  U
    ||||||||||||||||||
    UAAAGGUGACCGCCAAAA  A
ACUA                  UA
Stem-loop sequence UAAUUUCCACUGGCGGUUUUCUUAAUAAAACCGCCAGUGGAAAUAUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT069194.2
ncRNA:22   UCUUUUGGCGGUCACCUUUAAU   1
  |*||||||||||||||||||**
targets:850   AUAAAACCGCCAGUGGAAAUGC   871

2.5 Zea mays full-length cDNA clone ZM_BFb0304H22 mRNA, complete cds NA coding protein psRNATarget
NM_001176701.1
ncRNA:22   UCUUUUGGCGGUCACCUUUAAU   1
  |*||||||||||||||||||**
targets:850   AUAAAACCGCCAGUGGAAAUGC   871

2.5 Zea mays uncharacterized LOC100384113 (LOC100384113), mRNA NA coding protein psRNATarget
EZ101180.1
ncRNA:22   UCUUUUGGCGGUCACCUUUAAU   1
  |*|=|||||*||||||||||||
targets:32   ACAGAACCGACAGUGGAAAUUA   53

2.5 TSA: Zea mays contig36836, mRNA sequence NA coding protein psRNATarget