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BaseInfo

ncRNA ID novel_zma_miR10299
Species Zea mays
Class miRNA
Genome position Chr1:49571922-49571987 [+]
Reference genome RefGen_v4
Source SRR5099742
Length 22
Mature sequence(if miRNA) 45 - UGAGCAUGAUGUUAUACUGGUU - 66
Stem-loop(if miRNA) --   -    U    -    A  ---A      UUU
  UCA UAUA ACAU AUGU CA    UUUAUA   A
  ||| |||| |||| |||| ||    ||||||
  GGU AUAU UGUA UACG GU    AAAUAU   C
UU   C    -    G    A  CCAC      UAU
Stem-loop sequence UCAUAUAUACAUAUGUACAAUUUAUAUUUACUAUUAUAAACACCUGAGCAUGAUGUUAUACUGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001196720.1
ncRNA:22   UUGGUCAUAUUGUAGUACGAGU   1
  =|=|||||*||||||*||||||
targets:151   GAUCAGUAGAACAUCCUGCUCA   172

2.5 Zea mays beta-galactosidase (LOC100502243), mRNA NA coding protein psRNATarget
BT087512.1
ncRNA:22   UUGGUCAUAUUGUAGUACGAGU   1
  =|=|||||*||||||*||||||
targets:151   GAUCAGUAGAACAUCCUGCUCA   172

2.5 Zea mays full-length cDNA clone ZM_BFb0099K01 mRNA, complete cds NA coding protein psRNATarget