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BaseInfo

ncRNA ID novel_zma_miR10297
Species Zea mays
Class miRNA
Genome position Chr1:47752155-47752283 [+]
Reference genome RefGen_v4
Source SRR5099742
Length 24
Mature sequence(if miRNA) 106 - UAUGAUGAAUUUGAACUUGAAAUU - 129
Stem-loop(if miRNA) --      UG               A    A    U           --U     A    UUUUC
  UUUCAA  UCAAAUUCAUUAUAU UUAA AGAU CAAAAAGAGAA   UAUGA AUAU     A
  ||||||  ||||||||||||||| |||| |||| |||||||||||   ||||| ||||     C
  AAAGUU  AGUUUAAGUAGUAUA AAUU UCUA GUUUUUCUCUU   AUACU UAUG     U
UU      CA               C    C    U           UUU     C    UUUUU
Stem-loop sequence UUUCAAUGUCAAAUUCAUUAUAUAUUAAAAGAUUCAAAAAGAGAAUUAUGAAAUAUUUUUCACUUUUUUGUAUCUCAUAUUUUUCUCUUUUUGUAUCUCUUAACAUAUGAUGAAUUUGAACUUGAAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008669948.2
ncRNA:24   UUAAAGUUCAAGUUUAAGUAGUAU   1
  =||||=||||||*|||||||||||
targets:1978   GAUUUUAAGUUCUAAUUCAUCAUA   2001

2.5 PREDICTED: Zea mays mTERF family protein (LOC100285943), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008669949.2
ncRNA:24   UUAAAGUUCAAGUUUAAGUAGUAU   1
  =||||=||||||*|||||||||||
targets:1963   GAUUUUAAGUUCUAAUUCAUCAUA   1986

2.5 PREDICTED: Zea mays mTERF family protein (LOC100285943), transcript variant X3, mRNA NA coding protein psRNATarget