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BaseInfo

ncRNA ID	novel_zma_miR10289
Species	Zea mays
Class	miRNA
Genome position	Chr1:185981908-185982033 [-]
Reference genome	RefGen_v4
Source	SRR5099742
Length	24
Mature sequence(if miRNA)	1 - UUAGACAGCGAACUAAACAGGCCC - 24
Stem-loop(if miRNA)	--               -GG      G            -C   AGGUUAAUCGUUCAAAUUGA   GCCUGUUUGGUUCGU   UUAACU UGUCACACUUUG  CUA                    A   |||||||||||||||   |||||| ||||||||||||  |||                    G   CGGACAAAUCAAGCG   GAUUGA ACAGUGUGAAAU  AUU                    A CC               ACA      -            AG   GAAAAGAUAGAUUCUAAUCA
Stem-loop sequence	GCCUGUUUGGUUCGUGGUUAACUGUGUCACACUUUGCCUAAGGUUAAUCGUUCAAAUUGAAGAACUAAUCUUAGAUAGAAAAGUUAGAUAAAGUGUGACAAGUUAGACAGCGAACUAAACAGGCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ057573.1	ncRNA:24   CCCGGACAAAUCAAGCGACAGAUU   1   |||*||||||=||||||||||||| targets:234   GGGACUGUUUGGUUCGCUGUCUAA   257 Target Full Sequence	1.0	TSA: Zea mays contig58695, mRNA sequence	NA	coding protein	psRNATarget
LQ235498.1	ncRNA:24   CCCGGACAAAUCAAGCGACAGAUU   1   |||=*|||||=||||||||||||| targets:2   GGGUAUGUUUGGUUCGCUGUCUAA   25 Target Full Sequence	1.0	Sequence 1493 from Patent EP2985353	NA	coding protein	psRNATarget
JB163829.1	ncRNA:24   CCCGGACAAAUCAAGCGACAGAUU   1   |||=*|||||=||||||||||||| targets:2   GGGUAUGUUUGGUUCGCUGUCUAA   25 Target Full Sequence	1.0	Sequence 1493 from Patent EP2559767	NA	coding protein	psRNATarget
HI403368.1	ncRNA:24   CCCGGACAAAUCAAGCGACAGAUU   1   |||=*|||||=||||||||||||| targets:2   GGGUAUGUUUGGUUCGCUGUCUAA   25 Target Full Sequence	1.0	Sequence 1493 from Patent EP2074227	NA	coding protein	psRNATarget
BT033899.1	ncRNA:24   CCCGGACAAAUCAAGCGACAGAUU   1   **||||||||=|||=||||||||| targets:941   UAGCCUGUUUGGUUUGCUGUCUAA   964 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0124C10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137142.2	ncRNA:24   CCCGGACAAAUCAAGCGACAGAUU   1   **||||||||=|||=||||||||| targets:1005   UAGCCUGUUUGGUUUGCUGUCUAA   1028 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100191713), mRNA	NA	coding protein	psRNATarget
XM_008661761.2	ncRNA:24   CCCGGACAAAUCAAGCGACAGAUU   1   ||*==|||||=||||||||||||| targets:3579   GGAUUUGUUUGGUUCGCUGUCUAA   3602 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103638977 (LOC103638977), mRNA	NA	coding protein	psRNATarget
EU945129.1	ncRNA:24   CCC---GGACAAAUCAAGCGACAGAUU   1   *||---=||||||=||||||||||||| targets:528   AGGAUAUCUGUUUGGUUCGCUGUCUAA   554 Target Full Sequence	1.0	Zea mays clone 241976 mRNA sequence	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:24   CCCGGACAAAUCAAGCGACAGAUU   1   ||||*|||||=||||||||*|||| targets:2   GGGCAUGUUUGGUUCGCUGCCUAA   25 Target Full Sequence	2.5	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
HI403286.1	ncRNA:24   CCCGGACAAAUCAAGCGACAGAUU   1   ||||*|||||=||||||||*|||| targets:2   GGGCAUGUUUGGUUCGCUGCCUAA   25 Target Full Sequence	2.5	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
JB163747.1	ncRNA:24   CCCGGACAAAUCAAGCGACAGAUU   1   ||||*|||||=||||||||*|||| targets:2   GGGCAUGUUUGGUUCGCUGCCUAA   25 Target Full Sequence	2.5	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
BT038009.1	ncRNA:24   CCCGGACAAAUCAAGCGACAGAUU   1   *|*|||||||=||||||||*|||| targets:262   UGACCUGUUUGGUUCGCUGCCUAA   285 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206M21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656231.2	ncRNA:24   CCCGGACAAAUCAAGCGACAGAUU   1   *|*|||||||=||||||||*|||| targets:5225   UGACCUGUUUGGUUCGCUGCCUAA   5248 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100216556), transcript variant X1, mRNA	NA	coding protein	psRNATarget