Search result

BaseInfo

ncRNA ID novel_zma_miR10286
Species Zea mays
Class miRNA
Genome position Chr1:189127542-189127623 [-]
Reference genome RefGen_v4
Source SRR5099742
Length 24
Mature sequence(if miRNA) 59 - AUUGAGUUAUCUGGUGCACAUGCA - 82
Stem-loop(if miRNA) --A UG      CU   G         -G   AU  GAG   U
   U  AGUUAU  GGU CACAUGCAU  GUC  CU   GUC U
   |  ||||||  ||| |||||||||  |||  ||   ||| U
   G  UCAAUA  CCG GUGUACGUG  CAG  GA   CAG G
GGA GU      AC   G         GA   --  --A   G
Stem-loop sequence AUUGAGUUAUCUGGUGCACAUGCAUGGUCAUCUGAGGUCUUUGGGACAAGGACAGGUGCAUGUGGGCCCAAUAACUUGGAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ109992.1
ncRNA:24   ACGUACACGUGGUCUAUUGAGUUA   1
  ||||||||||||||||||||=|||
targets:479   UGCAUGUGCACCAGAUAACUUAAU   502

1.5 TSA: Zea mays contig45652, mRNA sequence NA coding protein psRNATarget
EZ087213.1
ncRNA:24   ACGUACACGUGGUCUAUUGAGUUA   1
  ||||||||||||||||||||=||*
targets:48   UGCAUGUGCACCAGAUAACUUAAC   71

2.5 TSA: Zea mays contig22859, mRNA sequence NA coding protein psRNATarget
EZ058335.1
ncRNA:24   ACGUACACGUGGUCUAUUGAGUUA   1
  ||||||||||||||||||||=||*
targets:487   UGCAUGUGCACCAGAUAACUUAAC   510

2.5 TSA: Zea mays contig59457, mRNA sequence NA coding protein psRNATarget
BT067946.2
ncRNA:24   ACGUACACGUGGUCUAUUGAGUUA   1
  ||||||||||||||||||||=||*
targets:460   UGCAUGUGCACCAGAUAACUUAAC   483

2.5 Zea mays full-length cDNA clone ZM_BFb0003M08 mRNA, complete cds NA coding protein psRNATarget