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BaseInfo

ncRNA ID novel_zma_miR10282
Species Zea mays
Class miRNA
Genome position Chr1:227164685-227164779 [-]
Reference genome RefGen_v4
Source SRR5099742;SRR5100248;SRR5100255;SRR5105961
Length 24
Mature sequence(if miRNA) 1 - CUCGGCAAAGAAUAUGGCACUCGA - 24
Stem-loop(if miRNA) --       ---      UA     G       G  U            A
  GAGUGUU   UUCUUU  CCGAG GUUUUUU CG GGCACUCGGCAA G
  |||||||   ||||||  ||||| ||||||| || |||||||||||| A
  CUCACGG   AAGAAA  GGCUC CAAAAAA GC CCGUGAGCCGUU G
AG       UAU      -C     A       -  -            U
Stem-loop sequence GAGUGUUUUCUUUUACCGAGGGUUUUUUGCGUGGCACUCGGCAAAGAGUUUGCCGAGUGCCCGAAAAAACACUCGGCAAAGAAUAUGGCACUCGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT042352.1
ncRNA:24   AGCUCACGGUAUAAGAAACGGCUC   1
  *||||||=|||||||||||||||*
targets:1212   CCGAGUGUCAUAUUCUUUGCCGAU   1235

2.0 Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds NA coding protein psRNATarget
NM_001148473.2
ncRNA:24   AGCUCACGGUAUAAGAAACGGCUC   1
  *||||||=|||||||||||||||*
targets:1262   CCGAGUGUCAUAUUCUUUGCCGAU   1285

2.0 Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA NA coding protein psRNATarget