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BaseInfo

ncRNA ID novel_zma_miR10273
Species Zea mays
Class miRNA
Genome position Chr1:27590568-27590777 [+]
Reference genome RefGen_v4
Source SRR5099742;SRR5100248
Length 24
Mature sequence(if miRNA) 1 - UUAGCUCUUGGACACUAGAAAUGG - 24
Stem-loop(if miRNA) --              CUA       CACUAU          C   CA           A    C   AACC      CAGAGAUUAAAAAUU        A  A  A  A   U
  UUAGCUCUUGGACA   GAAAUGG      UUAUCAGGAA ACA  GGGAAACGUUG UUAU AUC    GCACAC               UUCAUUUU GG AA AU UUG A
  ||||||||||||||   |||||||      |||||||||| |||  ||||||||||| |||| |||    ||||||               |||||||| || || || |||
  AAUCGAGAAUCUGU   CUUUACC      AAUAGUCCUU UGU  UUCUUUGUAAC AGUA UAG    CGUGUG               AGGUAAAG CC UU UG AAC C
GA              AAC       ----AU          U   AA           A    A   -ACC      ---------------        G  G  C  A   A
Stem-loop sequence UUAGCUCUUGGACACUAGAAAUGGCACUAUUUAUCAGGAACACACAGGGAAACGUUGAUUAUCAUCAACCGCACACCAGAGAUUAAAAAUUUUCAUUUUAGGAAAAAUAUUGUACACAAAGUCUUGCCGGAAAUGGAGUGUGCCCAGAUAAUGAACAAUGUUUCUUAAUGUUUUCCUGAUAAUACCAUUUCCAAUGUCUAAGAGCUAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT066707.1
ncRNA:24   GGUAAAGAUCACAGGUUCUCGAUU   1
  *||||||||*|||||||*||||||
targets:602   ACAUUUCUAUUGUCCAAAAGCUAA   625

2.5 Zea mays full-length cDNA clone ZM_BFb0055L07 mRNA, complete cds NA coding protein psRNATarget