Search result

BaseInfo

ncRNA ID	novel_zma_miR10262
Species	Zea mays
Class	miRNA
Genome position	Chr1:248444484-248444574 [+]
Reference genome	RefGen_v4
Source	SRR5099742;SRR5100255
Length	21
Mature sequence(if miRNA)	71 - AUUCCCUAAAUUGCCAAACAC - 91
Stem-loop(if miRNA)	--GUAACA              UUUGG  U         UUUUUAG         UAGUUUAGGGGGUG     UG AGGGACUAA       C         ||||||||||||||     || |||||||||       C         GUUAAAUCCCUUAU     AC UCUCUGAUU       C CACAAACC              -UUUA  -         UUACCUC
Stem-loop sequence	GUAACAUAGUUUAGGGGGUGUUUGGUGUAGGGACUAAUUUUUAGCCCCUCCAUUUUAGUCUCUCAAUUUUAUUCCCUAAAUUGCCAAACAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008650489.2	ncRNA:21   CACAAACCGUUAAAUCCCUUA   1   |||||||||||||||||||*| targets:1705   GUGUUUGGCAAUUUAGGGAUU   1725 Target Full Sequence	1.5	PREDICTED: Zea mays putative glycerol-3-phosphate transporter 5 (LOC103629335), mRNA	NA	coding protein	psRNATarget
BT064873.2	ncRNA:21   CACAAACCGUUAAAUCCCUUA   1   **|||||||||||||||||*| targets:619   CCGUUUGGCAAUUUAGGGACU   639 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0304M17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543289.1	ncRNA:21   CACAAACCGUUAAAUCCCUUA   1   **|||||||||||||||||*| targets:1331   CCGUUUGGCAAUUUAGGGACU   1351 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382611 (LOC100382611), mRNA	NA	coding protein	psRNATarget
XM_020540952.1	ncRNA:21   CACAAACCGUUAAAUCCCUUA   1   ***||||||||||||||||*| targets:2101   CACUUUGGCAAUUUAGGGACU   2121 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103632787 (LOC103632787), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020540951.1	ncRNA:21   CACAAACCGUUAAAUCCCUUA   1   ***||||||||||||||||*| targets:3958   CACUUUGGCAAUUUAGGGACU   3978 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103632787 (LOC103632787), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540950.1	ncRNA:21   CACAAACCGUUAAAUCCCUUA   1   ***||||||||||||||||*| targets:3842   CACUUUGGCAAUUUAGGGACU   3862 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103632787 (LOC103632787), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU943837.1	ncRNA:21   CACAAACCGUUAAAUCCCUUA   1   **|||*|||||||||||||*| targets:483   UAGUUCGGCAAUUUAGGGACU   503 Target Full Sequence	2.5	Zea mays clone 1689635 mRNA sequence	NA	coding protein	psRNATarget