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BaseInfo

ncRNA ID	novel_zma_miR10258
Species	Zea mays
Class	miRNA
Genome position	Chr9:109209366-109209451 [+]
Reference genome	RefGen_v4
Source	SRR5099742;SRR5105959;SRR5105961
Length	21
Mature sequence(if miRNA)	1 - AUUGAAGAGGAUUGGAGAGGA - 21
Stem-loop(if miRNA)	--    A          AGA            UUGCUAG   A   AUUG AGAGGAUUGG   GGAUUAAAUCUC       UCG A   |||| ||||||||||   ||||||||||||       |||   UAAU UCUCCUAACU   CCUAAUUUAGGG       AGU A CC    C          CAC            CAAAAUA   U
Stem-loop sequence	AUUGAAGAGGAUUGGAGAGGAUUAAAUCUCUUGCUAGUCGAAAUUGAAUAAAACGGGAUUUAAUCCCACUCAAUCCUCUCUAAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ069159.1	ncRNA:21   AGGAGAGGUUAGGAGAAGUUA   1   |||||||||||||*||||||| targets:58   UCCUCUCCAAUCCCCUUCAAU   78 Target Full Sequence	1.5	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
BT083957.2	ncRNA:21   AGGAGAGGUUAGGAGAAGUUA   1   ||=|||*|||||||||||||* targets:267   UCUUCUGCAAUCCUCUUCAAG   287 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0058K04 mRNA, complete cds	NA	coding protein	psRNATarget
BT069589.2	ncRNA:21   AGGAGAGGUUAGGAGAAGUUA   1   |||||*|||||||*||||||| targets:1023   UCCUCACCAAUCCCCUUCAAU   1043 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds	NA	coding protein	psRNATarget
EU942844.1	ncRNA:21   AGGAGAGGUUAGGAGAAGUUA   1   |||*|*=|||||||||||||| targets:195   UCCACCUCAAUCCUCUUCAAU   215 Target Full Sequence	3.0	Zea mays clone 1540330 mRNA sequence	NA	coding protein	psRNATarget
NM_001196032.1	ncRNA:21   AGGAGAGGUUAGGAGAAGUUA   1   |=|*|||||*||||||||||| targets:372   UUCGCUCCAUUCCUCUUCAAU   392 Target Full Sequence	2.5	Zea mays uncharacterized LOC100501270 (LOC100501270), mRNA	NA	coding protein	psRNATarget
BT084925.1	ncRNA:21   AGGAGAGGUUAGGAGAAGUUA   1   |=|*|||||*||||||||||| targets:372   UUCGCUCCAUUCCUCUUCAAU   392 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0207G04 mRNA, complete cds	NA	coding protein	psRNATarget
EU949726.1	ncRNA:21   AGGAGAGGUUAGGAGAAGUUA   1   |=|*|||||*||||||||||| targets:582   UUCGCUCCAUUCCUCUUCAAU   602 Target Full Sequence	2.5	Zea mays clone 442532 mRNA sequence	NA	coding protein	psRNATarget
XM_020539146.1	ncRNA:21   AGGAGAGGUUAGGAGAAGUUA   1   |=|*|||||*||||||||||| targets:5289   UUCGCUCCAUUCCUCUUCAAU   5309 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100501270 (LOC100501270), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539145.1	ncRNA:21   AGGAGAGGUUAGGAGAAGUUA   1   |=|*|||||*||||||||||| targets:5396   UUCGCUCCAUUCCUCUUCAAU   5416 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100501270 (LOC100501270), transcript variant X1, mRNA	NA	coding protein	psRNATarget