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BaseInfo

ncRNA ID novel_zma_miR10230
Species Zea mays
Class miRNA
Genome position Chr9:150352872-150353001 [+]
Reference genome RefGen_v4
Source SRR5099742
Length 21
Mature sequence(if miRNA) 1 - UUACAUCCCCUCACAUCCACC - 21
Stem-loop(if miRNA) --     U             C   C   U        U     ---G    AAAA   -AUU   A
  UUACA CCCCUCACAUCCA CAC UGG GGUCCAUA AAAUA    AAGA    CAA    ACU G
  ||||| ||||||||||||| ||| ||| |||||||| |||||    ||||    |||    |||
  AAUGU GGGGAGUGUAGGU GUG ACU CCGGGUGU UUUGU    UUUU    GUU    UGG A
GA     C             A   A   U        U     AUAA    AAAC   GAAU   A
Stem-loop sequence UUACAUCCCCUCACAUCCACCACCUGGUGGUCCAUAUAAAUAGAAGAAAAACAAAUUACUAGAAGGUUAAGUUGCAAAUUUUAAUAUGUUUUUGUGGGCCUUCAAGUGAUGGAUGUGAGGGGCUGUAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008654724.2
ncRNA:21   CCACCUACACUCCCCUACAUU   1
  *||||||||||||||*|||||
targets:3224   AGUGGAUGUGAGGGGCUGUAA   3244

1.5 PREDICTED: Zea mays flowering time control protein FPA (LOC103633041), transcript variant X3, mRNA NA coding protein psRNATarget