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BaseInfo

ncRNA ID	novel_zma_miR10227
Species	Zea mays
Class	miRNA
Genome position	Chr1:211323054-211323138 [+]
Reference genome	RefGen_v4
Source	SRR5099742
Length	21
Mature sequence(if miRNA)	65 - UAAUCUGGACAUAUUAUAAUC - 85
Stem-loop(if miRNA)	--       C A                             A   UUAUAAU U UCCAGAUUAUAUAAUCCAACAAAUUUUGA C   ||||||| | ||||||||||||||||||||||||||||| A   AAUAUUA A AGGUCUAAUAUAUUAGGUUGUUUAAAACU G CU       U C                             U
Stem-loop sequence	UUAUAAUCUAUCCAGAUUAUAUAAUCCAACAAAUUUUGAACAGUUCAAAAUUUGUUGGAUUAUAUAAUCUGGACAUAUUAUAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008682894.2	ncRNA:21   CUAAUAUUAUACAGGUCUAAU   1   ||||||||||||||||||||| targets:4979   GAUUAUAAUAUGUCCAGAUUA   4999 Target Full Sequence	0.0	PREDICTED: Zea mays transducin family protein / WD-40 repeat family protein (si618080f12(37)), transcript variant X5, mRNA	NA	coding protein	psRNATarget
BT034217.1	ncRNA:21   CUAAUAUUAUACAGGUCUAAU   1   |||||||||||||=||||||| targets:622   GAUUAUAAUAUGUUCAGAUUA   642 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0032A11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137382.1	ncRNA:21   CUAAUAUUAUACAGGUCUAAU   1   |||||||||||||=||||||| targets:622   GAUUAUAAUAUGUUCAGAUUA   642 Target Full Sequence	1.5	Zea mays uncharacterized LOC100191958 (LOC100191958), mRNA	NA	coding protein	psRNATarget
EU944194.1	ncRNA:21   CUAAUAUUAUACAGGUCUAAU   1   |||||||||*||||||||||| targets:279   GAUUAUAAUCUGUCCAGAUUA   299 Target Full Sequence	1.5	Zea mays clone 1711585 mRNA sequence	NA	coding protein	psRNATarget
EU948493.1	ncRNA:21   CUAAUAUUAUACAGGUCUAAU   1   |||||||||*||||||||||| targets:253   GAUUAUAAUCUGUCCAGAUUA   273 Target Full Sequence	1.5	Zea mays clone 378933 mRNA sequence	NA	coding protein	psRNATarget
LQ235553.1	ncRNA:21   CUAAUAUUAUACAGGUCUAAU   1   |||||||||*||||||||||| targets:18   GAUUAUAAUCUGUCCAGAUUA   38 Target Full Sequence	1.5	Sequence 1548 from Patent EP2985353	NA	coding protein	psRNATarget
JB163768.1	ncRNA:21   CUAAUAUUAUACAGGUCUAAU   1   |||||||||*||||||||||| targets:18   GAUUAUAAUCUGUCCAGAUUA   38 Target Full Sequence	1.5	Sequence 1432 from Patent EP2559767	NA	coding protein	psRNATarget
HI403423.1	ncRNA:21   CUAAUAUUAUACAGGUCUAAU   1   |||||||||*||||||||||| targets:18   GAUUAUAAUCUGUCCAGAUUA   38 Target Full Sequence	1.5	Sequence 1548 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235437.1	ncRNA:21   CUAAUAUUAUACAGGUCUAAU   1   |||||||||*||||||||||| targets:18   GAUUAUAAUCUGUCCAGAUUA   38 Target Full Sequence	1.5	Sequence 1432 from Patent EP2985353	NA	coding protein	psRNATarget
JB163884.1	ncRNA:21   CUAAUAUUAUACAGGUCUAAU   1   |||||||||*||||||||||| targets:18   GAUUAUAAUCUGUCCAGAUUA   38 Target Full Sequence	1.5	Sequence 1548 from Patent EP2559767	NA	coding protein	psRNATarget
HI403307.1	ncRNA:21   CUAAUAUUAUACAGGUCUAAU   1   |||||||||*||||||||||| targets:18   GAUUAUAAUCUGUCCAGAUUA   38 Target Full Sequence	1.5	Sequence 1432 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008683420.2	ncRNA:21   CUAAUAUUAUACAGGUCUAAU   1   |||||||*||||||=|||||| targets:345   GAUUAUAUUAUGUCUAGAUUA   365 Target Full Sequence	2.5	PREDICTED: Zea mays DnaJ/Hsp40 cysteine-rich domain superfamily protein (LOC100276646), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945446.1	ncRNA:21   CUAAUAUUAUACAGGUCUAAU   1   *||||||||*||||||||||| targets:433   AAUUAUAAUCUGUCCAGAUUA   453 Target Full Sequence	1.5	Zea mays clone 273503 mRNA sequence	NA	coding protein	psRNATarget