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BaseInfo

ncRNA ID novel_zma_miR10226
Species Zea mays
Class miRNA
Genome position Chr8:106644059-106644133 [+]
Reference genome RefGen_v4
Source SRR5099742;SRR5100248
Length 24
Mature sequence(if miRNA) 52 - UGUAUGAACUUGUGAGCCUGAGGU - 75
Stem-loop(if miRNA) --       -   C  AG    A  CC  A  CC  UAU
  UUCGGGC CGC GG  CGUA CA  CU CU  AC   G
  ||||||| ||| ||  |||| ||  || ||  ||
  GAGUCCG GUG UC  GUAU GU  GA GA  UG   U
UG       A   U  AA    -  UC  -  UA  UAG
Stem-loop sequence UUCGGGCCGCCGGAGCGUAACACCCUACUCCACUAUGUGAUGUAUAGAGCUUGUAUGAACUUGUGAGCCUGAGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020545234.1
ncRNA:24   UGGAGUCCGAGUGUUCAAGUAUGU   1
  |*||||||||||||||||||*|||
targets:4941   AGCUCAGGCUCACAAGUUCACACA   4964

1.5 PREDICTED: Zea mays ABC transporter I family member 1-like (LOC103642079), transcript variant X2, mRNA NA coding protein psRNATarget
EU961461.1
ncRNA:24   UG-GAGUCCGAGUGUUCAAGUAUGU   1
  ||-||||**||||||||||||||||
targets:115   ACUCUCAAACUCACAAGUUCAUACA   139

2.0 Zea mays clone 235705 hypothetical protein mRNA, complete cds NA coding protein psRNATarget