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BaseInfo

ncRNA ID novel_zma_miR10216
Species Zea mays
Class miRNA
Genome position Chr1:202619650-202619759 [+]
Reference genome RefGen_v4
Source SRR5099742;SRR5100248;SRR5100255
Length 21
Mature sequence(if miRNA) 90 - UGUAGGAAACGGAUGACGCCU - 110
Stem-loop(if miRNA) -GUAUC     -C     C   AAA     ---    CU   A  ---GG      UA
      CAUCC  UUCCU UAA   GUGUC   GGCU  UUU GC     UGAAGC  A
      |||||  ||||| |||   |||||   ||||  ||| ||     ||||||
      GUAGG  AAGGA GUU   CAUAG   CCGG  AAA CG     ACUUUG  A
UCCGCA     CA     U   AAC     UCU    CC   C  AGUAA      CG
Stem-loop sequence GUAUCCAUCCCUUCCUCUAAAAAGUGUCGGCUCUUUUAGCGGUGAAGCUAAAGCGUUUCAAAUGAGCCAAACCGGCCUCUGAUACCAAUUGUAGGAAACGGAUGACGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT016820.1
ncRNA:21   UCCGCAGUAGGCAAAGGAUGU   1
  ||||||||*||||||||||||
targets:1091   AGGCGUCACCCGUUUCCUACA   1111

1.5 Zea mays clone Contig653 mRNA sequence NA coding protein psRNATarget
EU943181.1
ncRNA:21   UCCGCAGUAGGCAAAGGAUGU   1
  ||||||||*||||||||||||
targets:1824   AGGCGUCACCCGUUUCCUACA   1844

1.5 Zea mays clone 1580698 mRNA sequence NA coding protein psRNATarget