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BaseInfo

ncRNA ID	novel_zma_miR10200
Species	Zea mays
Class	miRNA
Genome position	Chr1:190373743-190373906 [+]
Reference genome	RefGen_v4
Source	SRR5099742
Length	25
Mature sequence(if miRNA)	1 - AGCCGGCUGCAAACCAGAAUGUUUG - 25
Stem-loop(if miRNA)	--  C           C              U            -    UCUA        C   ---A  G  -U    ACAA   AG CGGCUGCAAAC AGAAUGUUUGCAGC CCUCACAAAAAG GAGG    ACCCCACC GCA    CA CA  UAAC    C   || ||||||||||| |||||||||||||| |||||||||||| ||||    |||||||| |||    || ||  ||||    U   UC GCCGACGUUUG UCUUACAAACGUCG GGAGUGUUUUUU CUCC    UGGGGUGG CGU    GU GU  AUUG    A CA  A           A              C            A    UAAC        A   CCAG  G  CU    CAAA
Stem-loop sequence	AGCCGGCUGCAAACCAGAAUGUUUGCAGCUCCUCACAAAAAGGAGGUCUAACCCCACCCGCAACAGCAUUAACACAACUAAAACGUUAUCUGGUGGACCUGCAGGUGGGGUCAAUCCUCAUUUUUUGUGAGGCGCUGCAAACAUUCUAGUUUGCAGCCGACUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001137162.1	ncRNA:25   GUUUGUAAGACCAAACGUCGGCCGA   1   =||||||*|||||||||||=||||| targets:2195   UAAACAUCCUGGUUUGCAGUCGGCU   2219 Target Full Sequence	2.5	Zea mays uncharacterized LOC100191734 (LOC100191734), mRNA	NA	coding protein	psRNATarget
BT033928.1	ncRNA:25   GUUUGUAAGACCAAACGUCGGCCGA   1   =||||||*|||||||||||=||||| targets:2195   UAAACAUCCUGGUUUGCAGUCGGCU   2219 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0036M23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682759.2	ncRNA:25   GUUUGUAAGACCAAACGUCGGCCGA   1   =||||||*|||||||||||=||||| targets:2633   UAAACAUCCUGGUUUGCAGUCGGCU   2657 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682758.2	ncRNA:25   GUUUGUAAGACCAAACGUCGGCCGA   1   =||||||*|||||||||||=||||| targets:2636   UAAACAUCCUGGUUUGCAGUCGGCU   2660 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU968721.1	ncRNA:25   GUUUGUAAGACCAAACGUCGGCCGA   1   ||||||*||||||||||||||||*| targets:1047   CAAACAGUCUGGUUUGCAGCCGGGU   1071 Target Full Sequence	2.5	Zea mays clone 323697 tyrosine specific protein phosphatase family protein mRNA, complete cds	NA	coding protein	psRNATarget