Search result

BaseInfo

ncRNA ID	novel_zma_miR10196
Species	Zea mays
Class	miRNA
Genome position	Chr8:135041313-135041401 [-]
Reference genome	RefGen_v4
Source	SRR5099742
Length	22
Mature sequence(if miRNA)	68 - CCUCAAAUCCUCUUCGAGAUUG - 89
Stem-loop(if miRNA)	-C               A         G A      U      GA   CUCAAAUCCUCUUCG GAUUGGAGG G UUGAGG GGAAAU  A   ||||||||||||||| ||||||||| | |||||| ||||||   GAGUUUAGGGGAAGU CUAACUUCU U AACUCU CCUUUA  C UU               C         G -      -      AU
Stem-loop sequence	CCUCAAAUCCUCUUCGAGAUUGGAGGGGAUUGAGGUGGAAAUGAACUAAUUUCCUCUCAAUGUCUUCAAUCCUGAAGGGGAUUUGAGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008671926.2	ncRNA:22   GUUAGAGCUUCUCCUAAACUCC   1   |||||||||||=|||||||||* targets:1083   CAAUCUCGAAGGGGAUUUGAGA   1104 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647382), mRNA	NA	coding protein	psRNATarget
XM_008664337.2	ncRNA:22   GUUAGAGCUUCUCCUAAACUCC   1   |||||*|||||=|||||||||| targets:2187   CAAUCCCGAAGGGGAUUUGAGG   2208 Target Full Sequence	2.5	PREDICTED: Zea mays ABC transporter F family member 1 (LOC103640881), mRNA	NA	coding protein	psRNATarget
KJ727999.1	ncRNA:22   GUUAGAGCUUCUCCUAAACUCC   1   =*=|||||||||||=||||||| targets:49   UUGUCUCGAAGAGGGUUUGAGG   70 Target Full Sequence	1.5	Zea mays clone pUT6123 TUB transcription factor (TUB14) mRNA, partial cds	NA	coding protein	psRNATarget
BT085811.1	ncRNA:22   GUUAGAGCUUCUCCUAAACUCC   1   =*=|||||||||||=||||||| targets:219   UUGUCUCGAAGAGGGUUUGAGG   240 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0067F13 mRNA, complete cds	NA	coding protein	psRNATarget
AY109994.1	ncRNA:22   GUUAGAGCUUCUCCUAAACUCC   1   =*=|||||||||||=||||||| targets:214   UUGUCUCGAAGAGGGUUUGAGG   235 Target Full Sequence	1.5	Zea mays CL768_1 mRNA sequence	NA	coding protein	psRNATarget
XM_008663672.2	ncRNA:22   GUUAGAGCUUCUCCUAAACUCC   1   =*=|||||||||||=||||||| targets:265   UUGUCUCGAAGAGGGUUUGAGG   286 Target Full Sequence	1.5	PREDICTED: Zea mays TUB-transcription factor 14 (AY109994), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008663670.2	ncRNA:22   GUUAGAGCUUCUCCUAAACUCC   1   =*=|||||||||||=||||||| targets:347   UUGUCUCGAAGAGGGUUUGAGG   368 Target Full Sequence	1.5	PREDICTED: Zea mays TUB-transcription factor 14 (AY109994), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001154410.1	ncRNA:22   GUUAGAGCUUCUCCUAAACUCC   1   =*=|||||||||||=||||||| targets:344   UUGUCUCGAAGAGGGUUUGAGG   365 Target Full Sequence	1.5	Zea mays TUB-transcription factor 14 (AY109994), mRNA	NA	coding protein	psRNATarget
EU956884.1	ncRNA:22   GUUAGAGCUUCUCCUAAACUCC   1   =*=|||||||||||=||||||| targets:344   UUGUCUCGAAGAGGGUUUGAGG   365 Target Full Sequence	1.5	Zea mays clone 1576586 tubby-like protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663669.2	ncRNA:22   GUUAGAGCUUCUCCUAAACUCC   1   =*=|||||||||||=||||||| targets:385   UUGUCUCGAAGAGGGUUUGAGG   406 Target Full Sequence	1.5	PREDICTED: Zea mays TUB-transcription factor 14 (AY109994), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008663671.2	ncRNA:22   GUUAGAGCUUCUCCUAAACUCC   1   =*=|||||||||||=||||||| targets:528   UUGUCUCGAAGAGGGUUUGAGG   549 Target Full Sequence	1.5	PREDICTED: Zea mays TUB-transcription factor 14 (AY109994), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547122.1	ncRNA:22   GUUAGAGCUUCUCCUAAACUCC   1   ||||=*|||||||||||||||* targets:308   CAAUUCCGAAGAGGAUUUGAGU   329 Target Full Sequence	3.0	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547119.1	ncRNA:22   GUUAGAGCUUCUCCUAAACUCC   1   ||||=*|||||||||||||||* targets:416   CAAUUCCGAAGAGGAUUUGAGU   437 Target Full Sequence	3.0	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X1, mRNA	NA	coding protein	psRNATarget