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BaseInfo

ncRNA ID	novel_zma_miR10189
Species	Zea mays
Class	miRNA
Genome position	Chr8:179453641-179453770 [-]
Reference genome	RefGen_v4
Source	SRR5099742
Length	24
Mature sequence(if miRNA)	107 - UCAAACAUUCGAUAUGACAGAGGC - 130
Stem-loop(if miRNA)	--                                                         CUCGUC   UCAAACAUUCGAUAUGACAGAGGCUAAAUUUUAGUUUGGGGUAACCAAACACCCCGU      U   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   AGUUUGUAAGCUAUACUGUCUCCGAUUUAAAAUCAAACCCCAUUGGUUUGUGGGGCA      U CA                                                         CAAAUU
Stem-loop sequence	UCAAACAUUCGAUAUGACAGAGGCUAAAUUUUAGUUUGGGGUAACCAAACACCCCGUCUCGUCUUUUAAACACGGGGUGUUUGGUUACCCCAAACUAAAAUUUAGCCUCUGUCAUAUCGAAUGUUUGAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY104898.1	ncRNA:24   CGGAGACAGUAUAGCUUACAAACU   1   |||-|||||||||||||||||||| targets:1195   GCC-CUGUCAUAUCGAAUGUUUGA   1217 Target Full Sequence	0.0	Zea mays PCO078090 mRNA sequence	NA	coding protein	psRNATarget
NM_001139394.1	ncRNA:24   CGGAGACAGUAUAGCUUACAAACU   1   |||-|||||||||||||||||||| targets:1187   GCC-CUGUCAUAUCGAAUGUUUGA   1209 Target Full Sequence	0.0	Zea mays uncharacterized LOC100194359 (pco078090), mRNA	NA	coding protein	psRNATarget
BT036886.1	ncRNA:24   CGGAGACAGUAUAGCUUACAAACU   1   |||-|||||||||||||||||||| targets:1187   GCC-CUGUCAUAUCGAAUGUUUGA   1209 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0146B11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020544947.1	ncRNA:24   CGGAGACAGUAUAGCUUACAAACU   1   |||||||||*||||||||||||*| targets:2746   GCCUCUGUCCUAUCGAAUGUUUAA   2769 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100273701 (LOC100273701), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163851.1	ncRNA:24   CGGAGACAGUAUAGCUUACAAACU   1   |=||||*|||*||||||||||||| targets:9   GUCUCUAUCACAUCGAAUGUUUGA   32 Target Full Sequence	2.0	Sequence 1515 from Patent EP2559767	NA	coding protein	psRNATarget
HI403390.1	ncRNA:24   CGGAGACAGUAUAGCUUACAAACU   1   |=||||*|||*||||||||||||| targets:9   GUCUCUAUCACAUCGAAUGUUUGA   32 Target Full Sequence	2.0	Sequence 1515 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235520.1	ncRNA:24   CGGAGACAGUAUAGCUUACAAACU   1   |=||||*|||*||||||||||||| targets:9   GUCUCUAUCACAUCGAAUGUUUGA   32 Target Full Sequence	2.0	Sequence 1515 from Patent EP2985353	NA	coding protein	psRNATarget
BT065587.1	ncRNA:24   CGGAGACAGUAUAGCUUACAAACU   1   |||*||*|||*||||||||||||| targets:340   GCCCCUAUCACAUCGAAUGUUUGA   363 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0316E21 mRNA, complete cds	NA	coding protein	psRNATarget
EU968043.1	ncRNA:24   CGGAGACAGUAUAGCUUACAAACU   1   |||*||*|||*||||||||||||| targets:1421   GCCCCUAUCACAUCGAAUGUUUGA   1444 Target Full Sequence	2.0	Zea mays clone 313378 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT054237.2	ncRNA:24   CGGAGACAGUAUAGCUUACAAACU   1   |||*||*|||*||||||||||||| targets:840   GCCCCUAUCACAUCGAAUGUUUGA   863 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0189C11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152444.1	ncRNA:24   CGGAGACAGUAUAGCUUACAAACU   1   |||*||*|||*||||||||||||| targets:840   GCCCCUAUCACAUCGAAUGUUUGA   863 Target Full Sequence	2.0	Zea mays uncharacterized LOC100279435 (LOC100279435), mRNA	NA	coding protein	psRNATarget
EU949360.1	ncRNA:24   CGGAGACAGUAUAGCUUACAAACU   1   |||*||*|||*||||||||||||| targets:667   GCCCCUAUCACAUCGAAUGUUUGA   690 Target Full Sequence	2.0	Zea mays clone 403134 mRNA sequence	NA	coding protein	psRNATarget
XM_008656975.2	ncRNA:24   CGGAGACAGUAUAGCUUACAAACU   1   |||*||*|||*||||||||||||| targets:661   GCCCCUAUCACAUCGAAUGUUUGA   684 Target Full Sequence	2.0	PREDICTED: Zea mays putative disease resistance RPP13-like protein 1 (LOC103634594), mRNA	NA	coding protein	psRNATarget
JB163849.1	ncRNA:24   CGGAGACAGUAUAGCUUACAAACU   1   ||=*||*|||*||||||||||||| targets:9   GCUCCUAUCACAUCGAAUGUUUGA   32 Target Full Sequence	2.0	Sequence 1513 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235518.1	ncRNA:24   CGGAGACAGUAUAGCUUACAAACU   1   ||=*||*|||*||||||||||||| targets:9   GCUCCUAUCACAUCGAAUGUUUGA   32 Target Full Sequence	2.0	Sequence 1513 from Patent EP2985353	NA	coding protein	psRNATarget
HI403388.1	ncRNA:24   CGGAGACAGUAUAGCUUACAAACU   1   ||=*||*|||*||||||||||||| targets:9   GCUCCUAUCACAUCGAAUGUUUGA   32 Target Full Sequence	2.0	Sequence 1513 from Patent EP2074227	NA	coding protein	psRNATarget