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BaseInfo

ncRNA ID	novel_zma_miR10185
Species	Zea mays
Class	miRNA
Genome position	Chr8:165872546-165872617 [+]
Reference genome	RefGen_v4
Source	SRR5099742;SRR5100248
Length	24
Mature sequence(if miRNA)	1 - UUUAGUCCCUGUUUUAGUCUCACC - 24
Stem-loop(if miRNA)	--U      C  --          CACC      - AAC    UUAGUC CU  GUUUUAGUCU    AUUUGG C   U    |||||| ||  ||||||||||    |||||| |    AAUCAG GA  UAAAAUCAGA    UAAAUC G   U UCU      A  AA          ---A      A AGA
Stem-loop sequence	UUUAGUCCCUGUUUUAGUCUCACCAUUUGGCAACUUAGAGACUAAAUAAGACUAAAAUAAAGAGACUAAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166592.1	ncRNA:24   CCACUCUGAUUUUGUCCCUGAUUU   1   ||||=||||||||=|||||||||| targets:53   GGUGGGACUAAAAUAGGGACUAAA   76 Target Full Sequence	1.5	Sequence 4256 from Patent EP2559767	NA	coding protein	psRNATarget
HI406131.1	ncRNA:24   CCACUCUGAUUUUGUCCCUGAUUU   1   ||||=||||||||=|||||||||| targets:53   GGUGGGACUAAAAUAGGGACUAAA   76 Target Full Sequence	1.5	Sequence 4256 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238261.1	ncRNA:24   CCACUCUGAUUUUGUCCCUGAUUU   1   ||||=||||||||=|||||||||| targets:53   GGUGGGACUAAAAUAGGGACUAAA   76 Target Full Sequence	1.5	Sequence 4256 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020550720.1	ncRNA:24   CCACUCUGAUUUUGUCCCUGAUUU   1   *|||=||||||||||*|||||||| targets:306   AGUGGGACUAAAACAUGGACUAAA   329 Target Full Sequence	1.5	PREDICTED: Zea mays RING-H2 finger protein ATL40 (LOC100281312), mRNA	NA	coding protein	psRNATarget
EZ051160.1	ncRNA:24   CCACUCUGAUUUUGUCCCUGAUUU   1   ||*|=||||||||||*|||||||| targets:584   GGGGGGACUAAAACAUGGACUAAA   607 Target Full Sequence	1.5	TSA: Zea mays contig52280, mRNA sequence	NA	coding protein	psRNATarget
BT041065.1	ncRNA:24   CCACUCUGAUUUUGUCCCUGAUUU   1   |*||=||||||||||*|||||||| targets:1117   GAUGGGACUAAAACAUGGACUAAA   1140 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0171C12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147850.1	ncRNA:24   CCACUCUGAUUUUGUCCCUGAUUU   1   |*||=||||||||||*|||||||| targets:1117   GAUGGGACUAAAACAUGGACUAAA   1140 Target Full Sequence	1.5	Zea mays Nitrilase-like protein 2 (LOC100273413), mRNA	NA	coding protein	psRNATarget
XM_020544935.1	ncRNA:24   CCACUCUGAUUUUGUCCCUGAUUU   1   |*||=||||||||||*|||||||| targets:1237   GAUGGGACUAAAACAUGGACUAAA   1260 Target Full Sequence	1.5	PREDICTED: Zea mays Nitrilase-like protein 2 (LOC100273413), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU955435.1	ncRNA:24   CCACUCUGAUUUUGUCCCUGAUUU   1   *||*=||=||||||||*||||||| targets:886   AGUAGGAUUAAAACAGAGACUAAA   909 Target Full Sequence	2.5	Zea mays clone 1532088 mRNA sequence	NA	coding protein	psRNATarget
BT040499.1	ncRNA:24   CCACUCUGAUUUUGUCCCUGAUUU   1   *||*=||=||||||||*||||||| targets:988   AGUAGGAUUAAAACAGAGACUAAA   1011 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0097A24 mRNA, complete cds	NA	coding protein	psRNATarget
BT067870.1	ncRNA:24   CCACUCUGAUUUUGUCCCUGAUUU   1   *||*=||=||||||||*||||||| targets:1018   AGUAGGAUUAAAACAGAGACUAAA   1041 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0176I21 mRNA, complete cds	NA	coding protein	psRNATarget
BT066502.1	ncRNA:24   CCACUCUGAUUUUGUCCCUGAUUU   1   |||*=||||*||||||*||||||| targets:352   GGUAGGACUUAAACAGAGACUAAA   375 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0013I13 mRNA, complete cds	NA	coding protein	psRNATarget
BT064399.1	ncRNA:24   CCACUCUGAUUUUGUCCCUGAUUU   1   |||*=||||*||||||*||||||| targets:1274   GGUAGGACUUAAACAGAGACUAAA   1297 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0165L03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175194.1	ncRNA:24   CCACUCUGAUUUUGUCCCUGAUUU   1   |||*=||||*||||||*||||||| targets:1274   GGUAGGACUUAAACAGAGACUAAA   1297 Target Full Sequence	2.5	Zea mays putative HLH DNA-binding domain superfamily protein (LOC100382453), mRNA	NA	coding protein	psRNATarget