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BaseInfo

ncRNA ID osa-miRf10615-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - AAGAGAGGAUGCAUGCAUCA - NA
Stem-loop(if miRNA)       AC                     A     ---A    AA
ACAAAU  UGCAUGCAUCCUCUCUUUCAG AAAUG    GGCU  U
||||||  ||||||||||||||||||||| |||||    ||||
UGUUUA  ACGUACGUAGGAGAGAAAGUC UUUAC    UCGA  A
      CU                     C     CACC    GA
Stem-loop sequence ACAAAUACUGCAUGCAUCCUCUCUUUCAGAAAAUGAGGCUAAUAAGAGCUCCACCAUUUCCUGAAAGAGAGGAUGCAUGCAUCAUUUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
CT830099.1
ncRNA:20   ACUACGUACGUAGGAGAGAA   1
  |*|*||||||||||||||||
targets:1121   UUAGGCAUGCAUCCUCUCUU   1140

2.0 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA119N09, full insert sequence NA coding protein psRNATarget
AK061787.1
ncRNA:20   ACUACGUACGUAGGAGAGAA   1
  |*|*||||||||||||||||
targets:1109   UUAGGCAUGCAUCCUCUCUU   1128

2.0 Oryza sativa Japonica Group cDNA clone:001-039-E10, full insert sequence NA coding protein psRNATarget
XM_015795373.1
ncRNA:20   ACUACGUACGUAGGAGAGAA   1
  |*|*||||||||||||||||
targets:1143   UUAGGCAUGCAUCCUCUCUU   1162

2.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346032 (LOC4346032), mRNA uncharacterized LOC4346032(LOC4346032) coding protein psRNATarget
AK242708.1
ncRNA:20   ACUACGUACGUAGGAGAGAA   1
  ||||*=*|||||||||||||
targets:762   UGAUUUCUGCAUCCUCUCUU   781

3.0 Oryza sativa Japonica Group cDNA, clone: J090040N01, full insert sequence NA coding protein psRNATarget
XM_015764217.1
ncRNA:20   ACUACGUACGUAGGAGAGAA   1
  ||*|||*||||||||||||*
targets:235   UGCUGCUUGCAUCCUCUCUG   254

3.0 PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X18, mRNA 3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929) coding protein psRNATarget
XM_015764211.1
ncRNA:20   ACUACGUACGUAGGAGAGAA   1
  ||*|||*||||||||||||*
targets:242   UGCUGCUUGCAUCCUCUCUG   261

3.0 PREDICTED: Oryza sativa Japonica Group 3-hydroxyisobutyryl-CoA hydrolase 1 (LOC4351929), transcript variant X13, mRNA 3-hydroxyisobutyryl-CoA hydrolase 1(LOC4351929) coding protein psRNATarget