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BaseInfo

ncRNA ID	novel_zma_miR10174
Species	Zea mays
Class	miRNA
Genome position	Chr6:160422758-160422879 [+]
Reference genome	RefGen_v4
Source	SRR1997865;SRR5451006;SRR1997866;SRR2089698;SRR2089706
Length	24
Mature sequence(if miRNA)	99 - AGUUAGACAGUGAACCAAACAGGC - 122
Stem-loop(if miRNA)	--A           -  G      GC      ---C UUGCCUAAGGCUAGACGUUCGAAUUG    UGUUUGGUUCG UG CUAACU  GCCACA    U                          A    ||||||||||| || ||||||  ||||||    |                          A    ACAAACCAAGU AC GAUUGA  CGGUGU    C                          G CGG           G  A      -A      AAAA GGAUUGAAAAGACGGAUUCCAAUCAA
Stem-loop sequence	AUGUUUGGUUCGUGGCUAACUGCGCCACACUUUGCCUAAGGCUAGACGUUCGAAUUGAAGAACUAACCUUAGGCAGAAAAGUUAGGCAAAAUGUGGCAAGUUAGACAGUGAACCAAACAGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968686.1	ncRNA:24   CGGACAAACCAAGUGACAGAUUGA   1   |=|||||||||||||||*|||||| targets:608   GUCUGUUUGGUUCACUGCCUAACU   631 Target Full Sequence	1.5	Zea mays clone 323451 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT065161.1	ncRNA:24   CGGACAAACCAAGUGACAGAUUGA   1   |=|||||||||||||||*|||||| targets:591   GUCUGUUUGGUUCACUGCCUAACU   614 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550436.1	ncRNA:24   CGGACAAACCAAGUGACAGAUUGA   1   |=|||||||||||||||*|||||| targets:626   GUCUGUUUGGUUCACUGCCUAACU   649 Target Full Sequence	1.5	PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA	NA	coding protein	psRNATarget
LQ235498.1	ncRNA:24   CGGACAAACCAAGUGACAGAUUGA   1   |=*||||||||||=|||||||||| targets:4   GUAUGUUUGGUUCGCUGUCUAACU   27 Target Full Sequence	1.5	Sequence 1493 from Patent EP2985353	NA	coding protein	psRNATarget
HI403368.1	ncRNA:24   CGGACAAACCAAGUGACAGAUUGA   1   |=*||||||||||=|||||||||| targets:4   GUAUGUUUGGUUCGCUGUCUAACU   27 Target Full Sequence	1.5	Sequence 1493 from Patent EP2074227	NA	coding protein	psRNATarget
JB163829.1	ncRNA:24   CGGACAAACCAAGUGACAGAUUGA   1   |=*||||||||||=|||||||||| targets:4   GUAUGUUUGGUUCGCUGUCUAACU   27 Target Full Sequence	1.5	Sequence 1493 from Patent EP2559767	NA	coding protein	psRNATarget
AY108027.1	ncRNA:24   CG--GACAAACCAAGUGACAGAUUGA   1   ||--||||||||*|||||||=||||| targets:143   GCAACUGUUUGGAUCACUGUUUAACU   168 Target Full Sequence	2.5	Zea mays PCO101987 mRNA sequence	NA	coding protein	psRNATarget
BT085183.1	ncRNA:24   CG--GACAAACCAAGUGACAGAUUGA   1   ||--||||||||*|||||||=||||| targets:1164   GCAACUGUUUGGAUCACUGUUUAACU   1189 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0324B12 mRNA, complete cds	NA	coding protein	psRNATarget
EZ104052.1	ncRNA:24   CGGACAAACCAAGUGACAGAUUGA   1   |*||||||||*|||||||=||||| targets:15   GACUGUUUGGAUCACUGUUUAACU   38 Target Full Sequence	2.5	TSA: Zea mays contig39709, mRNA sequence	NA	coding protein	psRNATarget
BT063930.1	ncRNA:24   CGGACAAACCAAGUGACAGAUUGA   1   |*||||||||*|||||||=||||| targets:1154   GACUGUUUGGAUCACUGUUUAACU   1177 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0120N07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175076.1	ncRNA:24   CGGACAAACCAAGUGACAGAUUGA   1   |*||||||||*|||||||=||||| targets:1154   GACUGUUUGGAUCACUGUUUAACU   1177 Target Full Sequence	2.5	Zea mays Noc2p family (LOC100382327), mRNA	NA	coding protein	psRNATarget
XM_008670111.2	ncRNA:24   CGGACAAACCAAGUGACAGAUUGA   1   |*||||||||*|||||||=||||| targets:1203   GACUGUUUGGAUCACUGUUUAACU   1226 Target Full Sequence	2.5	PREDICTED: Zea mays Noc2p family (LOC100382327), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008662023.2	ncRNA:24   CGGACAAACCAAGUGACAGAUUGA   1   **|||||||*|||||||*|||||| targets:2313   UACUGUUUGAUUCACUGCCUAACU   2336 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103639263 (LOC103639263), transcript variant X2, mRNA	NA	coding protein	psRNATarget