Search result

BaseInfo

ncRNA ID	novel_zma_miR10170
Species	Zea mays
Class	miRNA
Genome position	Chr7:54383642-54383696 [+]
Reference genome	RefGen_v4
Source	SRR5099742;SRR5100248;SRR5100255
Length	24
Mature sequence(if miRNA)	32 - UACGUGAAUUACUGAUCUUGGCAC - 55
Stem-loop(if miRNA)	--    U   G   C         AUC   GCUA GAU AGU AUUUAUGUA   G   |||| ||| ||| |||||||||   U   CGGU CUA UCA UAAGUGCAU   U CA    U   G   U         GUG
Stem-loop sequence	GCUAUGAUGAGUCAUUUAUGUAAUCGUUGUGUACGUGAAUUACUGAUCUUGGCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ050603.1	ncRNA:24   CACGGUUCUAGUCAUUAAGUGCAU   1   ||||||=||||||*|||||||||| targets:12   GUGCCAGGAUCAGCAAUUCACGUA   35 Target Full Sequence	2.5	TSA: Zea mays contig51723, mRNA sequence	NA	coding protein	psRNATarget
XM_020550893.1	ncRNA:24   CACGGUUCUAGUCAUUAAGUGCAU   1   ||||||=|||||||*||||||||| targets:515   GUGCCAGGAUCAGUUAUUCACGUA   538 Target Full Sequence	2.5	PREDICTED: Zea mays diacylglycerol O-acyltransferase 2D-like (LOC103650530), mRNA	NA	coding protein	psRNATarget
NM_001159083.2	ncRNA:24   CACGGUUCUAGUCAUUAAGUGCAU   1   ||||||=|||||||*||||||||| targets:1045   GUGCCAGGAUCAGUUAUUCACGUA   1068 Target Full Sequence	2.5	Zea mays oxidoreductase (LOC100286195), mRNA	NA	coding protein	psRNATarget
EU976070.1	ncRNA:24   CACGGUUCUAGUCAUUAAGUGCAU   1   ||||||=|||||||*||||||||| targets:1046   GUGCCAGGAUCAGUUAUUCACGUA   1069 Target Full Sequence	2.5	Zea mays clone 510496 oxidoreductase mRNA, complete cds	NA	coding protein	psRNATarget
EU975850.1	ncRNA:24   CACGGUUCUAGUCAUUAAGUGCAU   1   ||||||=|||||||*||||||||| targets:1236   GUGCCAGGAUCAGUUAUUCACGUA   1259 Target Full Sequence	2.5	Zea mays clone 503046 mRNA sequence	NA	coding protein	psRNATarget
EU940916.1	ncRNA:24   CACGGUUCUAGUCAUUAAGUGCAU   1   ||||||=|||||||*||||||||| targets:367   GUGCCAGGAUCAGUUAUUCACGUA   390 Target Full Sequence	2.5	Zea mays clone 1212834 mRNA sequence	NA	coding protein	psRNATarget
EU940954.1	ncRNA:24   CACGGUUCUAGUCAUUAAGUGCAU   1   ||||||=|||||||*||||||||| targets:1323   GUGCCAGGAUCAGUUAUUCACGUA   1346 Target Full Sequence	2.5	Zea mays clone 1220838 mRNA sequence	NA	coding protein	psRNATarget