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BaseInfo

ncRNA ID	novel_zma_miR10166
Species	Zea mays
Class	miRNA
Genome position	Chr7:11245163-11245286 [-]
Reference genome	RefGen_v4
Source	SRR5099742
Length	25
Mature sequence(if miRNA)	100 - UGCAUCUAAUCUAGAUCUAAUGAUG - 124
Stem-loop(if miRNA)	--U                U    AUG   GUUAUUUUAUAUUUAACCCCUUCCACCUAAAA    GCAUCUAAUCUAGAUC AAUG   ACU                                U    |||||||||||||||| ||||   |||                                A    CGUAGGUUAGAUCUAG UUGC   AAG                                U UCU                U    -CA   UAUACCUUCCCCAAUUUUCAUUUUAUCCAUGA
Stem-loop sequence	UGCAUCUAAUCUAGAUCUAAUGAUGACUGUUAUUUUAUAUUUAACCCCUUCCACCUAAAAUAUAGUACCUAUUUUACUUUUAACCCCUUCCAUAUGAAACCGUUUGAUCUAGAUUGGAUGCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235445.1	ncRNA:25   GUAGUAAUCUAGAUCUAAUCUACGU   1   ||||||||||||||||||||||||| targets:151   CAUCAUUAGAUCUAGAUUAGAUGCA   175 Target Full Sequence	0.0	Sequence 1440 from Patent EP2985353	NA	coding protein	psRNATarget
JB163776.1	ncRNA:25   GUAGUAAUCUAGAUCUAAUCUACGU   1   ||||||||||||||||||||||||| targets:151   CAUCAUUAGAUCUAGAUUAGAUGCA   175 Target Full Sequence	0.0	Sequence 1440 from Patent EP2559767	NA	coding protein	psRNATarget
HI403315.1	ncRNA:25   GUAGUAAUCUAGAUCUAAUCUACGU   1   ||||||||||||||||||||||||| targets:151   CAUCAUUAGAUCUAGAUUAGAUGCA   175 Target Full Sequence	0.0	Sequence 1440 from Patent EP2074227	NA	coding protein	psRNATarget
JB163752.1	ncRNA:25   GUAGUAAUCUAGAUCUAAUCUACGU   1   |||||||=||||||||||||||||| targets:151   CAUCAUUGGAUCUAGAUUAGAUGCA   175 Target Full Sequence	1.0	Sequence 1416 from Patent EP2559767	NA	coding protein	psRNATarget
HI403291.1	ncRNA:25   GUAGUAAUCUAGAUCUAAUCUACGU   1   |||||||=||||||||||||||||| targets:151   CAUCAUUGGAUCUAGAUUAGAUGCA   175 Target Full Sequence	1.0	Sequence 1416 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235421.1	ncRNA:25   GUAGUAAUCUAGAUCUAAUCUACGU   1   |||||||=||||||||||||||||| targets:151   CAUCAUUGGAUCUAGAUUAGAUGCA   175 Target Full Sequence	1.0	Sequence 1416 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235619.1	ncRNA:25   GUAGUAAUCUAGAUCUAAUCUACGU   1   ||||||||*|||||||||||||||| targets:152   CAUCAUUAAAUCUAGAUUAGAUGCA   176 Target Full Sequence	1.0	Sequence 1614 from Patent EP2985353	NA	coding protein	psRNATarget
JB163950.1	ncRNA:25   GUAGUAAUCUAGAUCUAAUCUACGU   1   ||||||||*|||||||||||||||| targets:152   CAUCAUUAAAUCUAGAUUAGAUGCA   176 Target Full Sequence	1.0	Sequence 1614 from Patent EP2559767	NA	coding protein	psRNATarget
HI403489.1	ncRNA:25   GUAGUAAUCUAGAUCUAAUCUACGU   1   ||||||||*|||||||||||||||| targets:152   CAUCAUUAAAUCUAGAUUAGAUGCA   176 Target Full Sequence	1.0	Sequence 1614 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235426.1	ncRNA:25   GUAGUAAUCUAGAUCUAAUCUACGU   1   |||||||||||||||||||*||||| targets:150   CAUCAUUAGAUCUAGAUUAAAUGCA   174 Target Full Sequence	1.5	Sequence 1421 from Patent EP2985353	NA	coding protein	psRNATarget
HI403296.1	ncRNA:25   GUAGUAAUCUAGAUCUAAUCUACGU   1   |||||||||||||||||||*||||| targets:150   CAUCAUUAGAUCUAGAUUAAAUGCA   174 Target Full Sequence	1.5	Sequence 1421 from Patent EP2074227	NA	coding protein	psRNATarget
JB163757.1	ncRNA:25   GUAGUAAUCUAGAUCUAAUCUACGU   1   |||||||||||||||||||*||||| targets:150   CAUCAUUAGAUCUAGAUUAAAUGCA   174 Target Full Sequence	1.5	Sequence 1421 from Patent EP2559767	NA	coding protein	psRNATarget
JB163548.1	ncRNA:25   GUAGUAAUCUAGAUCUAAUCUACGU   1   |||||||||||||||||||*||||| targets:137   CAUCAUUAGAUCUAGAUUAUAUGCA   161 Target Full Sequence	1.5	Sequence 1212 from Patent EP2559767	NA	coding protein	psRNATarget
HI403087.1	ncRNA:25   GUAGUAAUCUAGAUCUAAUCUACGU   1   |||||||||||||||||||*||||| targets:137   CAUCAUUAGAUCUAGAUUAUAUGCA   161 Target Full Sequence	1.5	Sequence 1212 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235217.1	ncRNA:25   GUAGUAAUCUAGAUCUAAUCUACGU   1   |||||||||||||||||||*||||| targets:137   CAUCAUUAGAUCUAGAUUAUAUGCA   161 Target Full Sequence	1.5	Sequence 1212 from Patent EP2985353	NA	coding protein	psRNATarget
BT083806.1	ncRNA:25   GUA-------GUAAUCUAGAUCUAAUCUACGU   1   |||-------|=||=||||||||||||||||* targets:1395   CAUAUGAAACCGUUGGAUCUAGAUUAGAUGCU   1426 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0041M07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177124.1	ncRNA:25   GUA-------GUAAUCUAGAUCUAAUCUACGU   1   |||-------|=||=||||||||||||||||* targets:1395   CAUAUGAAACCGUUGGAUCUAGAUUAGAUGCU   1426 Target Full Sequence	2.0	Zea mays uncharacterized LOC100384630 (LOC100384630), mRNA	NA	coding protein	psRNATarget
JB163783.1	ncRNA:25   GUA-------GUAAUCUAGAUCUAAUCUACGU   1   |||-------|=||=||||||||||||||||* targets:144   CAUAUGAAACCGUUGGAUCUAGAUUAGAUGCU   175 Target Full Sequence	2.0	Sequence 1447 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235452.1	ncRNA:25   GUA-------GUAAUCUAGAUCUAAUCUACGU   1   |||-------|=||=||||||||||||||||* targets:144   CAUAUGAAACCGUUGGAUCUAGAUUAGAUGCU   175 Target Full Sequence	2.0	Sequence 1447 from Patent EP2985353	NA	coding protein	psRNATarget
HI403322.1	ncRNA:25   GUA-------GUAAUCUAGAUCUAAUCUACGU   1   |||-------|=||=||||||||||||||||* targets:144   CAUAUGAAACCGUUGGAUCUAGAUUAGAUGCU   175 Target Full Sequence	2.0	Sequence 1447 from Patent EP2074227	NA	coding protein	psRNATarget