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BaseInfo

ncRNA ID	novel_zma_miR10147
Species	Zea mays
Class	miRNA
Genome position	Chr7:122951426-122951474 [-]
Reference genome	RefGen_v4
Source	SRR5099742
Length	23
Mature sequence(if miRNA)	1 - UUGACACUCGGCAAAGAACUCUU - 23
Stem-loop(if miRNA)	-GA  C               UUA    AG UCUUUGCCGAGUGUU   U    || |||||||||||||||    UC AGAAACGGCUCACAG   U UUC  A               UUU
Stem-loop sequence	GAAGCUCUUUGCCGAGUGUUUUAUUUUUGACACUCGGCAAAGAACUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167154.1	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   |||||*||||||||||||||||| targets:63   AAGAGCUCUUUGCCGAGUGUCAA   85 Target Full Sequence	1.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   |||||*||||||||||||||||| targets:63   AAGAGCUCUUUGCCGAGUGUCAA   85 Target Full Sequence	1.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
HI406693.1	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   |||||*||||||||||||||||| targets:63   AAGAGCUCUUUGCCGAGUGUCAA   85 Target Full Sequence	1.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
EU949560.1	ncRNA:23   UU--CUCAAGAAACGGCUCACAG-UU   1   ||--|*|||||||||||||||||-|| targets:501   AAUCGCGUUCUUUGCCGAGUGUCUAA   526 Target Full Sequence	3.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
EU962802.1	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   ||||**|*||||||||||||||| targets:980   AAGACAUGUUUGCCGAGUGUCAA   1002 Target Full Sequence	3.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:23   UU--CUCAAGAAACGGCUCACAG-UU   1   ||--|*|||||||||||||||||-|| targets:801   AAUCGUGUUCUUUGCCGAGUGUCUAA   826 Target Full Sequence	3.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:23   UU--CUCAAGAAACGGCUCACAG-UU   1   ||--|*|||||||||||||||||-|| targets:801   AAUCGUGUUCUUUGCCGAGUGUCUAA   826 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
LQ240695.1	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   *||-||||||||||||||||=|* targets:3   UAG-GUUCUUUGCCGAGUGUUAU   24 Target Full Sequence	2.5	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
HI408565.1	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   *||-||||||||||||||||=|* targets:3   UAG-GUUCUUUGCCGAGUGUUAU   24 Target Full Sequence	2.5	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
JB169026.1	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   *||-||||||||||||||||=|* targets:3   UAG-GUUCUUUGCCGAGUGUUAU   24 Target Full Sequence	2.5	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
BT035133.1	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   ***=|*||||||||||||||||| targets:1294   UUCGGCUCUUUGCCGAGUGUCAA   1316 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0041G19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138164.1	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   ***=|*||||||||||||||||| targets:1294   UUCGGCUCUUUGCCGAGUGUCAA   1316 Target Full Sequence	1.0	Zea mays OSIGBa0147B06.5 protein (LOC100192993), mRNA	NA	coding protein	psRNATarget
XM_008668897.2	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   ***=|*||||||||||||||||| targets:1242   UUCGGCUCUUUGCCGAGUGUCAA   1264 Target Full Sequence	1.0	PREDICTED: Zea mays OSIGBa0147B06.5 protein (LOC100192993), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547384.1	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   ***=|*||||||||||||||||| targets:1255   UUCGGCUCUUUGCCGAGUGUCAA   1277 Target Full Sequence	1.0	PREDICTED: Zea mays OSIGBa0147B06.5 protein (LOC100192993), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT042352.1	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   ***||*||||||||||||||||* targets:1200   UUUAGCUCUUUGCCGAGUGUCAU   1222 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148473.2	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   ***||*||||||||||||||||* targets:1250   UUUAGCUCUUUGCCGAGUGUCAU   1272 Target Full Sequence	2.0	Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA	NA	coding protein	psRNATarget
HI406492.1	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   |||*||*||*||||||||||||= targets:22   AAGCGUACUGUGCCGAGUGUCAG   44 Target Full Sequence	3.0	Sequence 4617 from Patent EP2074227	NA	coding protein	psRNATarget
JB166953.1	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   |||*||*||*||||||||||||= targets:22   AAGCGUACUGUGCCGAGUGUCAG   44 Target Full Sequence	3.0	Sequence 4617 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238622.1	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   |||*||*||*||||||||||||= targets:22   AAGCGUACUGUGCCGAGUGUCAG   44 Target Full Sequence	3.0	Sequence 4617 from Patent EP2985353	NA	coding protein	psRNATarget
BT067215.1	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   |||**|*|||||||||||||||* targets:1439   AAGCAUACUUUGCCGAGUGUCAU   1461 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   |||**|*|||||||||||||||* targets:1576   AAGCAUACUUUGCCGAGUGUCAU   1598 Target Full Sequence	3.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
BT064046.1	ncRNA:23   UUCUCAAGAAACGGCUCACAGUU   1   |||**|*|||||||||||||||* targets:1576   AAGCAUACUUUGCCGAGUGUCAU   1598 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget