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BaseInfo

ncRNA ID novel_zma_miR10144
Species Zea mays
Class miRNA
Genome position Chr7:19634266-19634323 [+]
Reference genome RefGen_v4
Source SRR5099742
Length 20
Mature sequence(if miRNA) 39 - CGGCAAAGAGUUUCUUUACC - 58
Stem-loop(if miRNA) -----C    AAG                UUA
      GAAA   UUCUUUGCCGAGUGUU   U
      ||||   ||||||||||||||||
      CUUU   GAGAAACGGCUCACAG   U
CCAUUU    ---                UUU
Stem-loop sequence CGAAAAAGUUCUUUGCCGAGUGUUUUAUUUUUGACACUCGGCAAAGAGUUUCUUUACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB167154.1
ncRNA:20   CCAUUUCUUUGAGAAACGGC   1
  ||*||||||=||||||||||
targets:18   GGCAAAGAAGCUCUUUGCCG   37

2.5 Sequence 4818 from Patent EP2559767 NA coding protein psRNATarget
HI406693.1
ncRNA:20   CCAUUUCUUUGAGAAACGGC   1
  ||*||||||=||||||||||
targets:18   GGCAAAGAAGCUCUUUGCCG   37

2.5 Sequence 4818 from Patent EP2074227 NA coding protein psRNATarget
LQ238823.1
ncRNA:20   CCAUUUCUUUGAGAAACGGC   1
  ||*||||||=||||||||||
targets:18   GGCAAAGAAGCUCUUUGCCG   37

2.5 Sequence 4818 from Patent EP2985353 NA coding protein psRNATarget
BT042352.1
ncRNA:20   CCAUUUCUUUGAGAAACGGC   1
  ||*||||||=||||||||||
targets:1253   GGCAAAGAAGCUCUUUGCCG   1272

2.5 Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds NA coding protein psRNATarget
NM_001148473.2
ncRNA:20   CCAUUUCUUUGAGAAACGGC   1
  ||*||||||=||||||||||
targets:1303   GGCAAAGAAGCUCUUUGCCG   1322

2.5 Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA NA coding protein psRNATarget
EU943199.1
ncRNA:20   CCAUUUCUUUGAGAAACGGC   1
  *||=||*||||||||||||*
targets:2467   UGUGAAAAAACUCUUUGCCU   2486

3.0 Zea mays clone 1584793 mRNA sequence NA coding protein psRNATarget
XM_020551784.1
ncRNA:20   CCAUUUCUUUGAGAAACGGC   1
  *||=||*||||||||||||*
targets:3168   UGUGAAAAAACUCUUUGCCU   3187

3.0 PREDICTED: Zea mays uncharacterized LOC103652751 (LOC103652751), mRNA NA coding protein psRNATarget
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