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BaseInfo

ncRNA ID novel_zma_miR10142
Species Zea mays
Class miRNA
Genome position Chr6:134658942-134659028 [+]
Reference genome RefGen_v4
Source SRR1997865;SRR5451005
Length 24
Mature sequence(if miRNA) 64 - AAUGUGGUUUGUUGAAUGUCGGUA - 87
Stem-loop(if miRNA) --    A      -     G UG     U U   A   -UAU   U
  UUGA UGUUCA CGAAU G  UUGAA G GGU UUG    CUG C
  |||| |||||| ||||| |  ||||| | ||| |||    |||
  GGCU GUAAGU GUUUG U  AACUU C CCA AAC    GAU G
AU    -      U     G GU     U -   -   UUUC   G
Stem-loop sequence UUGAAUGUUCACGAAUGGUGUUGAAUGUGGUAUUGUAUCUGUCGGUAGCUUUCAAACCCUUUCAAUGUGGUUUGUUGAAUGUCGGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ072423.1
ncRNA:24   AUGGCUGUAAGUUGUUUGGUGUAA   1
  ||=|-|||*|||*|||||||||||
targets:11   UAUC-ACAAUCACCAAACCACAUU   33

2.5 TSA: Zea mays contig08060, mRNA sequence NA coding protein psRNATarget