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BaseInfo

ncRNA ID novel_zma_miR10132
Species Zea mays
Class miRNA
Genome position Chr1:151683602-151683683 [+]
Reference genome RefGen_v4
Source SRR5099742;SRR1583942
Length 21
Mature sequence(if miRNA) 1 - AAUCCCCUUCAGGAUUGGAGG - 21
Stem-loop(if miRNA) --          AG       G       AU U     AGA
  AAUCCCCUUC  GAUUGGA GGGAUUG  G GGAAA   A
  ||||||||||  ||||||| |||||||  | |||||
  UUAGGGGAAG  CUAACUU CCCUAAU  C CCUUU   C
GU          CU       A       CU U     AAU
Stem-loop sequence AAUCCCCUUCAGGAUUGGAGGGGAUUGAUGUGGAAAAGAACUAAUUUCCUCUCUAAUCCCAUUCAAUCUCGAAGGGGAUUUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ069159.1
ncRNA:21   GGAGGUUAGGACUUCCCCUAA   1
  |||=||||||*||||||||||
targets:71   CCUUCAAUCCCGAAGGGGAUU   91

2.5 TSA: Zea mays contig04794, mRNA sequence NA coding protein psRNATarget
XM_020546797.1
ncRNA:21   GGAGGUUAGGACUUCCCCUAA   1
  ||||||||||*|||||||||*
targets:5219   CCUCCAAUCCCGAAGGGGAUA   5239

2.5 PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008666766.2
ncRNA:21   GGAGGUUAGGACUUCCCCUAA   1
  ||||||||||*|||||||||*
targets:5353   CCUCCAAUCCCGAAGGGGAUA   5373

2.5 PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X1, mRNA NA coding protein psRNATarget