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BaseInfo

ncRNA ID	novel_zma_miR10130
Species	Zea mays
Class	miRNA
Genome position	Chr6:86903653-86903779 [+]
Reference genome	RefGen_v4
Source	SRR5099742
Length	24
Mature sequence(if miRNA)	1 - UUUUAGUGCCUCCAAUUUAUUCCA - 24
Stem-loop(if miRNA)	--       G   C  A                 AC        C           G  A      UUUUAGU CCU CA UUUAUUCCAUUUUAGUC  UAAAUUGU AAAUAUGGAAA UA AAUA   ||||||| ||| || |||||||||||||||||  |||||||| ||||||||||| || |||G   AAAAUCA GGA GU AAAUAAGGUGAAAUCAG  AUUUAACG UUUAUACCUUU AU UUGA UA       G   A  A                 AU        U           G  A
Stem-loop sequence	UUUUAGUGCCUCCAAUUUAUUCCAUUUUAGUCACUAAAUUGUCAAAUAUGGAAAGUAAAAUAGAGUUAUAGUUUCCAUAUUUUGCAAUUUAUAGACUAAAGUGGAAUAAAAUGAAGGGACUAAAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238744.1	ncRNA:24   ACCUUAUUUAACCUCCGUGAUUUU   1   |||||||||*||||||*||||||| targets:72   UGGAAUAAAAUGGAGGGACUAAAA   95 Target Full Sequence	2.5	Sequence 4739 from Patent EP2985353	NA	coding protein	psRNATarget
HI406614.1	ncRNA:24   ACCUUAUUUAACCUCCGUGAUUUU   1   |||||||||*||||||*||||||| targets:72   UGGAAUAAAAUGGAGGGACUAAAA   95 Target Full Sequence	2.5	Sequence 4739 from Patent EP2074227	NA	coding protein	psRNATarget
JB167075.1	ncRNA:24   ACCUUAUUUAACCUCCGUGAUUUU   1   |||||||||*||||||*||||||| targets:72   UGGAAUAAAAUGGAGGGACUAAAA   95 Target Full Sequence	2.5	Sequence 4739 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020549268.1	ncRNA:24   ACCUUAUUUAACCUCCGUGAUUUU   1   |||||||||*||||||*||||||| targets:1239   UGGAAUAAAAUGGAGGGACUAAAA   1262 Target Full Sequence	2.5	PREDICTED: Zea mays ethylene-responsive transcription factor ERF039 (LOC100283619), mRNA	NA	coding protein	psRNATarget
XM_020550132.1	ncRNA:24   ACCUUAUUUAACCUCCGUGAUUUU   1   |||||||||*||||||*||||||| targets:117   UGGAAUAAAAUGGAGGGACUAAAA   140 Target Full Sequence	2.5	PREDICTED: Zea mays putrescine hydroxycinnamoyltransferase 1-like (LOC103649816), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552869.1	ncRNA:24   ACCUUAUUUAACCUCCGUGAUUUU   1   |||||||||*||||||*||||||| targets:1756   UGGAAUAAAAUGGAGGGACUAAAA   1779 Target Full Sequence	2.5	PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657139.2	ncRNA:24   ACCUUAUUUAACCUCCGUGAUUUU   1   **||*||||*||||||=||||||| targets:4206   GAGAUUAAAAUGGAGGUACUAAAA   4229 Target Full Sequence	2.5	PREDICTED: Zea mays ribosome biogenesis protein BMS1 homolog (LOC103634616), mRNA	NA	coding protein	psRNATarget
XM_020547055.1	ncRNA:24   ACCUUAUUUAACCUCCGUGAUUUU   1   |**||||||*||||||*||||||| targets:405   UAAAAUAAAAUGGAGGGACUAAAA   428 Target Full Sequence	2.5	PREDICTED: Zea mays myosin-6 (LOC103644344), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020547054.1	ncRNA:24   ACCUUAUUUAACCUCCGUGAUUUU   1   |**||||||*||||||*||||||| targets:407   UAAAAUAAAAUGGAGGGACUAAAA   430 Target Full Sequence	2.5	PREDICTED: Zea mays myosin-6 (LOC103644344), transcript variant X6, mRNA	NA	coding protein	psRNATarget