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BaseInfo

ncRNA ID	novel_zma_miR10127
Species	Zea mays
Class	miRNA
Genome position	Chr1:13275285-13275334 [+]
Reference genome	RefGen_v4
Source	SRR5099742;SRR5100255
Length	24
Mature sequence(if miRNA)	27 - AUAACACUCGGCAAAGAACUUCUU - 50
Stem-loop(if miRNA)	--         A         CAAA   GAGGUUCUU GCCGAGUGU    A   ||||||||| |||||||||   CUUCAAGAA CGGCUCACA    A UU         A         AUAU
Stem-loop sequence	GAGGUUCUUAGCCGAGUGUCAAAAAUAUAACACUCGGCAAAGAACUUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238823.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   ||||||*||||||||||||||||| targets:22   AAGAAGCUCUUUGCCGAGUGUUAU   45 Target Full Sequence	1.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   ||||-|*|||||||||||||||*| targets:103   AAGA-GCUCUUUGCCGAGUGUUUU   125 Target Full Sequence	2.5	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   ||||||*||||||||||||||||| targets:22   AAGAAGCUCUUUGCCGAGUGUUAU   45 Target Full Sequence	1.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   ||||-|*|||||||||||||||*| targets:103   AAGA-GCUCUUUGCCGAGUGUUUU   125 Target Full Sequence	2.5	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   ||||||*||||||||||||||||| targets:22   AAGAAGCUCUUUGCCGAGUGUUAU   45 Target Full Sequence	1.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   ||||-|*|||||||||||||||*| targets:103   AAGA-GCUCUUUGCCGAGUGUUUU   125 Target Full Sequence	2.5	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240695.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   ***|=||||||||||||||||||| targets:1   CUUAGGUUCUUUGCCGAGUGUUAU   24 Target Full Sequence	0.0	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
HI408565.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   ***|=||||||||||||||||||| targets:1   CUUAGGUUCUUUGCCGAGUGUUAU   24 Target Full Sequence	0.0	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
JB169026.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   ***|=||||||||||||||||||| targets:1   CUUAGGUUCUUUGCCGAGUGUUAU   24 Target Full Sequence	0.0	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   |||=-|||||||||||||||||*| targets:588   AAGG-GUUCUUUGCCGAGUGUUUU   610 Target Full Sequence	1.5	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   ||||-|*|||||||||||||||=| targets:1983   AAGA-GCUCUUUGCCGAGUGUUGU   2005 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   ||||-|*|||||||||||||||=| targets:1983   AAGA-GCUCUUUGCCGAGUGUUGU   2005 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
LQ238815.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   *|*|=||||||||||||||||*|| targets:40   UAUAGGUUCUUUGCCGAGUGUAAU   63 Target Full Sequence	1.5	Sequence 4810 from Patent EP2985353	NA	coding protein	psRNATarget
JB167146.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   *|*|=||||||||||||||||*|| targets:40   UAUAGGUUCUUUGCCGAGUGUAAU   63 Target Full Sequence	1.5	Sequence 4810 from Patent EP2559767	NA	coding protein	psRNATarget
HI406685.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   *|*|=||||||||||||||||*|| targets:40   UAUAGGUUCUUUGCCGAGUGUAAU   63 Target Full Sequence	1.5	Sequence 4810 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   *|*|=||||||||||||||||*|| targets:177   UAUAGGUUCUUUGCCGAGUGUAAU   200 Target Full Sequence	1.5	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
HI406962.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   *|*|=||||||||||||||||*|| targets:177   UAUAGGUUCUUUGCCGAGUGUAAU   200 Target Full Sequence	1.5	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
JB167423.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   *|*|=||||||||||||||||*|| targets:177   UAUAGGUUCUUUGCCGAGUGUAAU   200 Target Full Sequence	1.5	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
JB170246.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   =*||=|||||||||||||||*||* targets:76   GUGAGGUUCUUUGCCGAGUGCUAC   99 Target Full Sequence	2.5	Sequence 7910 from Patent EP2559767	NA	coding protein	psRNATarget
HI409785.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   =*||=|||||||||||||||*||* targets:76   GUGAGGUUCUUUGCCGAGUGCUAC   99 Target Full Sequence	2.5	Sequence 7910 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241915.1	ncRNA:24   UUCUUCAAGAAACGGCUCACAAUA   1   =*||=|||||||||||||||*||* targets:76   GUGAGGUUCUUUGCCGAGUGCUAC   99 Target Full Sequence	2.5	Sequence 7910 from Patent EP2985353	NA	coding protein	psRNATarget
LQ239157.1	ncRNA:24   UUCU----UCAAGAAACGGCUCACAAUA   1   *||=----=|||||||||||||||*||| targets:45   UAGGUCUUGGUUCUUUGCCGAGUGCUAU   72 Target Full Sequence	1.5	Sequence 5152 from Patent EP2985353	NA	coding protein	psRNATarget
HI407027.1	ncRNA:24   UUCU----UCAAGAAACGGCUCACAAUA   1   *||=----=|||||||||||||||*||| targets:45   UAGGUCUUGGUUCUUUGCCGAGUGCUAU   72 Target Full Sequence	1.5	Sequence 5152 from Patent EP2074227	NA	coding protein	psRNATarget
JB167488.1	ncRNA:24   UUCU----UCAAGAAACGGCUCACAAUA   1   *||=----=|||||||||||||||*||| targets:45   UAGGUCUUGGUUCUUUGCCGAGUGCUAU   72 Target Full Sequence	1.5	Sequence 5152 from Patent EP2559767	NA	coding protein	psRNATarget