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BaseInfo

ncRNA ID novel_zma_miR10122
Species Zea mays
Class miRNA
Genome position Chr6:35677855-35677994 [+]
Reference genome RefGen_v4
Source SRR5099742
Length 22
Mature sequence(if miRNA) 1 - UUUGAAAUAGUUGUGAGGAGUU - 22
Stem-loop(if miRNA) --                  A     U      U        C      GU             A  AUA
  UUUGAAAUAGUUGUGAGG GUUAU UGUAAA AAAUGACG GGGACG  CGUUGAAACUGGU CU   C
  |||||||||||||||||| ||||| |||||| |||||||| ||||||  ||||||||||||| ||
  AAACUUUAUCGACACUCC CAAUA ACAUUU UUUAUUGC CCCUGC  GUAACUUUGACCA GA   U
UU                  C     U      U        U      UG             C  AAU
Stem-loop sequence UUUGAAAUAGUUGUGAGGAGUUAUUUGUAAAUAAAUGACGCGGGACGGUCGUUGAAACUGGUACUAUACUUAAAGCACCAGUUUCAAUGGUCGUCCCUCGUUAUUUUUUUACAUAUAACCCCUCACAGCUAUUUCAAAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ104133.1
ncRNA:22   UUGAGGAGUGUUGAUAAAGUUU   1
  =|=|**||||||||||||||||
targets:27   GAUUGAUCACAACUAUUUCAAA   48

2.0 TSA: Zea mays contig39790, mRNA sequence NA coding protein psRNATarget
EZ049828.1
ncRNA:22   UUGAGGAGUGUUGAUAAAGUUU   1
  *|=*|=|||||||||||||||*
targets:640   CAUCCUUCACAACUAUUUCAAC   661

3.0 TSA: Zea mays contig50946, mRNA sequence NA coding protein psRNATarget