ncRNA ID | novel_zma_miR10122 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr6:35677855-35677994 [+] |
Reference genome | RefGen_v4 |
Source | SRR5099742 |
Length | 22 |
Mature sequence(if miRNA) | 1 - UUUGAAAUAGUUGUGAGGAGUU - 22 |
Stem-loop(if miRNA) |
--                  A     U      U        C      GU             A  AUA   UUUGAAAUAGUUGUGAGG GUUAU UGUAAA AAAUGACG GGGACG  CGUUGAAACUGGU CU   C   |||||||||||||||||| ||||| |||||| |||||||| ||||||  ||||||||||||| ||   AAACUUUAUCGACACUCC CAAUA ACAUUU UUUAUUGC CCCUGC  GUAACUUUGACCA GA   U UU                  C     U      U        U      UG             C  AAU |
Stem-loop sequence | UUUGAAAUAGUUGUGAGGAGUUAUUUGUAAAUAAAUGACGCGGGACGGUCGUUGAAACUGGUACUAUACUUAAAGCACCAGUUUCAAUGGUCGUCCCUCGUUAUUUUUUUACAUAUAACCCCUCACAGCUAUUUCAAAUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EZ104133.1 |
|
2.0 | TSA: Zea mays contig39790, mRNA sequence | NA | coding protein | psRNATarget | |||||||||
EZ049828.1 |
|
3.0 | TSA: Zea mays contig50946, mRNA sequence | NA | coding protein | psRNATarget |