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BaseInfo

ncRNA ID novel_zma_miR10114
Species Zea mays
Class miRNA
Genome position Chr6:74167319-74167392 [-]
Reference genome RefGen_v4
Source SRR5099742
Length 24
Mature sequence(if miRNA) 1 - AAAGCUAACUUCUUUGCCGAGUGU - 24
Stem-loop(if miRNA) --               AUU     C        GCC
  ACUCGGCAAAGAAGU   CUUUG CGAGUGCU   U
  |||||||||||||||   ||||| ||||||||
  UGAGCCGUUUCUUCA   GAAAC GCUCACGG   G
UG               AUC     A        AAG
Stem-loop sequence ACUCGGCAAAGAAGUAUUCUUUGCCGAGUGCUGCCUGGAAGGCACUCGACAAAGCUAACUUCUUUGCCGAGUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ238769.1
ncRNA:24   UGUGAGCCGUUUCUUCAAUCGAAA   1
  |||||||||||||||||||*||||
targets:43   ACACUCGGCAAAGAAGUUACCUUU   66

1.5 Sequence 4764 from Patent EP2985353 NA coding protein psRNATarget
JB167100.1
ncRNA:24   UGUGAGCCGUUUCUUCAAUCGAAA   1
  |||||||||||||||||||*||||
targets:43   ACACUCGGCAAAGAAGUUACCUUU   66

1.5 Sequence 4764 from Patent EP2559767 NA coding protein psRNATarget
HI406639.1
ncRNA:24   UGUGAGCCGUUUCUUCAAUCGAAA   1
  |||||||||||||||||||*||||
targets:43   ACACUCGGCAAAGAAGUUACCUUU   66

1.5 Sequence 4764 from Patent EP2074227 NA coding protein psRNATarget
XM_008651647.2
ncRNA:24   UGUGAGCCGUUUCUUCAAUCGAAA   1
  =||**||||||||||||*||||||
targets:1581   GCAGACGGCAAAGAAGUGAGCUUU   1604

1.5 PREDICTED: Zea mays Beta-arabinofuranosyltransferase RAY1 (LOC103630599), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008651643.2
ncRNA:24   UGUGAGCCGUUUCUUCAAUCGAAA   1
  =||**||||||||||||*||||||
targets:1578   GCAGACGGCAAAGAAGUGAGCUUU   1601

1.5 PREDICTED: Zea mays Beta-arabinofuranosyltransferase RAY1 (LOC103630599), transcript variant X1, mRNA NA coding protein psRNATarget