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BaseInfo

ncRNA ID	novel_zma_miR10112
Species	Zea mays
Class	miRNA
Genome position	Chr6:90588846-90589033 [-]
Reference genome	RefGen_v4
Source	SRR5099742
Length	24
Mature sequence(if miRNA)	165 - UCAUUUAGAGAAUUGUUGGAGAAU - 188
Stem-loop(if miRNA)	--                              C                           A          UA      ACUGG         UAGG   UCAUUUAGAGAAUUGUUGGAGAAUAGUUUU AUGUUAACUGCCUAAAUUAUUGAUUUA GAAGUUUUUU  AGAACU     AGUUGCUCU    A   |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||  ||||||     |||||||||   AGUAAAUCUCUUGACAACCUCUUAUCAAAA UACAAUUGAUGGAUUUAAUAACUAAAU CUUCAGAAAA  UCUUGA     UCAACGAGA    C CA                              -                           C          UC      -----         UUGU
Stem-loop sequence	UCAUUUAGAGAAUUGUUGGAGAAUAGUUUUCAUGUUAACUGCCUAAAUUAUUGAUUUAAGAAGUUUUUUUAAGAACUACUGGAGUUGCUCUUAGGACUGUUAGAGCAACUAGUUCUCUAAAAGACUUCCUAAAUCAAUAAUUUAGGUAGUUAACAUAAAACUAUUCUCCAACAGUUCUCUAAAUGAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020548642.1	ncRNA:24   UAAGAGGUUGUUAAGAGAUUUACU   1   |||||||||||=|||||||||||| targets:2772   AUUCUCCAACAGUUCUCUAAAUGA   2795 Target Full Sequence	1.5	PREDICTED: Zea mays ubiquitin-like-specific protease ESD4 (LOC103647934), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669572.2	ncRNA:24   UAAGAGGUUGUUAAGAGAUUUACU   1   |||||||||||=|||||||||||| targets:2736   AUUCUCCAACAGUUCUCUAAAUGA   2759 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669570.2	ncRNA:24   UAAGAGGUUGUUAAGAGAUUUACU   1   |||||||||||=|||||||||||| targets:2526   AUUCUCCAACAGUUCUCUAAAUGA   2549 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547655.1	ncRNA:24   UAAGAGGUUGUUAAGAGAUUUACU   1   |||||||||||=|||||||||||| targets:2482   AUUCUCCAACAGUUCUCUAAAUGA   2505 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/kelch-repeat protein SKIP6 (IDP176), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT054396.1	ncRNA:24   UAAGAGGUUGUUAAGAGAUUUACU   1   |||||||||||=|||||||||||| targets:1329   AUUCUCCAACAGUUCUCUAAAUGA   1352 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0030F12 mRNA, complete cds	NA	coding protein	psRNATarget
EZ085047.1	ncRNA:24   UAAGAGGUUGUUAAGAGAUUUACU   1   |*||*||||||=|||||||||||| targets:48   ACUCACCAACAGUUCUCUAAAUGA   71 Target Full Sequence	1.5	TSA: Zea mays contig20691, mRNA sequence	NA	coding protein	psRNATarget