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BaseInfo

ncRNA ID	novel_zma_miR10101
Species	Zea mays
Class	miRNA
Genome position	Chr6:143085899-143085983 [+]
Reference genome	RefGen_v4
Source	SRR5099742
Length	21
Mature sequence(if miRNA)	65 - UACCCUUGCUCCCAAACUAGC - 85
Stem-loop(if miRNA)	--UU      U     A  C    -   A    -      GGA     GUUUGG AGCAA GG AAUG AAG GAUU AGCGAG   U     |||||| ||||| || |||| ||| |||| ||||||   U     CAAACC UCGUU CC UUAC UUC CUAA UUGCUC   C CGAU      C     C  A    C   C    C      GAU
Stem-loop sequence	UUGUUUGGUAGCAAAGGCAAUGAAGAGAUUAGCGAGGGAUUCUAGCUCGUUCAAUCCCUUCCAUUACCCUUGCUCCCAAACUAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166488.1	ncRNA:21   CGAUCAAACCCUCGUUCCCAU   1   *||*|||||||||=||||||| targets:5   CCUUGUUUGGGAGUAAGGGUA   25 Target Full Sequence	2.5	Sequence 4152 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238157.1	ncRNA:21   CGAUCAAACCCUCGUUCCCAU   1   *||*|||||||||=||||||| targets:5   CCUUGUUUGGGAGUAAGGGUA   25 Target Full Sequence	2.5	Sequence 4152 from Patent EP2985353	NA	coding protein	psRNATarget
HI406027.1	ncRNA:21   CGAUCAAACCCUCGUUCCCAU   1   *||*|||||||||=||||||| targets:5   CCUUGUUUGGGAGUAAGGGUA   25 Target Full Sequence	2.5	Sequence 4152 from Patent EP2074227	NA	coding protein	psRNATarget
BT062966.1	ncRNA:21   CGAUCAAACCCUCGUUCCCAU   1   *||*|||||||||=||||||| targets:2541   CCUUGUUUGGGAGUAAGGGUA   2561 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0013E16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174804.1	ncRNA:21   CGAUCAAACCCUCGUUCCCAU   1   *||*|||||||||=||||||| targets:2541   CCUUGUUUGGGAGUAAGGGUA   2561 Target Full Sequence	2.5	Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), mRNA	NA	coding protein	psRNATarget
XM_008663899.2	ncRNA:21   CGAUCAAACCCUCGUUCCCAU   1   *||*|||||||||=||||||| targets:2629   CCUUGUUUGGGAGUAAGGGUA   2649 Target Full Sequence	2.5	PREDICTED: Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647699.2	ncRNA:21   CGAUCAAACCCUCGUUCCCAU   1   |||*||||||||||||||*|| targets:1791   GCUUGUUUGGGAGCAAGGAUA   1811 Target Full Sequence	2.5	PREDICTED: Zea mays calcium uptake protein, mitochondrial (LOC103627407), mRNA	NA	coding protein	psRNATarget
NM_001150318.1	ncRNA:21   CGAUCAAACCCUCGUUCCCAU   1   |=|*|||||||||||||||*| targets:1009   GUUUGUUUGGGAGCAAGGGGA   1029 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100276558), transcript variant 2, mRNA	NA	coding protein	psRNATarget
EU963261.1	ncRNA:21   CGAUCAAACCCUCGUUCCCAU   1   |=|*|||||||||||||||*| targets:1009   GUUUGUUUGGGAGCAAGGGGA   1029 Target Full Sequence	2.5	Zea mays clone 260003 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001320255.1	ncRNA:21   CGAUCAAACCCUCGUUCCCAU   1   |=|*|||||||||||||||*| targets:1218   GUUUGUUUGGGAGCAAGGGGA   1238 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100276558), transcript variant 1, mRNA	NA	coding protein	psRNATarget