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BaseInfo

ncRNA ID	novel_zma_miR10088
Species	Zea mays
Class	miRNA
Genome position	Chr5:5449518-5449605 [+]
Reference genome	RefGen_v4
Source	SRR5099742;SRR5100248;SRR5100255
Length	21
Mature sequence(if miRNA)	1 - UCCUCUCCCCUGCUGCCACGA - 21
Stem-loop(if miRNA)	--      C          ACGAG        -CAGC     -       UCCUCU CCCUGCUGCC     GCGCGGCU     UCCUC CUCGA   |||||| ||||||||||     ||||||||     ||||| ||||A   AGGAGG GGGGCGGCGG     CGCGCCGG     AGGGG GGGCG GG      C          -----        ACCUA     C
Stem-loop sequence	UCCUCUCCCCUGCUGCCACGAGGCGCGGCUCAGCUCCUCCUCGAAGCGGGCGGGGAAUCCAGGCCGCGCGGCGGCGGGGCGGAGGAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008651750.2	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   **||||||||||||*|||||| targets:118   GGGUGGCAGCAGGGCAGAGGA   138 Target Full Sequence	1.5	PREDICTED: Zea mays transcription initiation factor TFIID subunit 4 (LOC103630694), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651749.2	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   **||||||||||||*|||||| targets:118   GGGUGGCAGCAGGGCAGAGGA   138 Target Full Sequence	1.5	PREDICTED: Zea mays transcription initiation factor TFIID subunit 4 (LOC103630694), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ108895.1	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   ****||||||||||||||||| targets:289   CGAGGGCAGCAGGGGAGAGGA   309 Target Full Sequence	2.0	TSA: Zea mays contig44554, mRNA sequence	NA	coding protein	psRNATarget
AY107895.1	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   ****||||||||||||||||| targets:397   CGAGGGCAGCAGGGGAGAGGA   417 Target Full Sequence	2.0	Zea mays PCO072867 mRNA sequence	NA	coding protein	psRNATarget
XM_008666237.2	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   *=|*||||||||||||||||= targets:1173   AUGAGGCAGCAGGGGAGAGGG   1193 Target Full Sequence	2.0	PREDICTED: Zea mays la-related protein 6B (LOC103643076), mRNA	NA	coding protein	psRNATarget
NM_001154499.1	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   ****||||||||||||||||| targets:1923   CGAGGGCAGCAGGGGAGAGGA   1943 Target Full Sequence	2.0	Zea mays smr domain containing protein (LOC100281580), mRNA	NA	coding protein	psRNATarget
EU957172.1	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   ****||||||||||||||||| targets:1923   CGAGGGCAGCAGGGGAGAGGA   1943 Target Full Sequence	2.0	Zea mays clone 1584675 smr domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538944.1	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   ****||||||||||||||||| targets:1874   CGAGGGCAGCAGGGGAGAGGA   1894 Target Full Sequence	2.0	PREDICTED: Zea mays smr domain containing protein (LOC100281580), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538945.1	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   ****||||||||||||||||| targets:3137   CGAGGGCAGCAGGGGAGAGGA   3157 Target Full Sequence	2.0	PREDICTED: Zea mays smr domain containing protein (LOC100281580), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT066527.2	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   **|||||=|||||*||||||| targets:753   CAGUGGCGGCAGGCGAGAGGA   773 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019E04 mRNA, complete cds	NA	coding protein	psRNATarget
EU973961.1	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   ***||||||*||||||||||| targets:274   GGAUGGCAGGAGGGGAGAGGA   294 Target Full Sequence	2.5	Zea mays clone 425063 mRNA sequence	NA	coding protein	psRNATarget
A23629.1	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   ***||||||*||||||||||| targets:358   GGAUGGCAGGAGGGGAGAGGA   378 Target Full Sequence	2.5	Corn anther specific cDNA CA444	NA	coding protein	psRNATarget
AJ006702.1	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   ***||||||*||||||||||| targets:395   GGAUGGCAGGAGGGGAGAGGA   415 Target Full Sequence	2.5	Zea mays mRNA for anther specific protein	NA	coding protein	psRNATarget
EU959439.1	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   ***||||||*||||||||||| targets:404   GGAUGGCAGGAGGGGAGAGGA   424 Target Full Sequence	2.5	Zea mays clone 218169 LIM1 protein precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001308146.1	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   ***||||||*||||||||||| targets:404   GGAUGGCAGGAGGGGAGAGGA   424 Target Full Sequence	2.5	Zea mays MFS14 protein (MFS14), mRNA	NA	coding protein	psRNATarget
EU959097.1	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   ***||||||*||||||||||| targets:403   GGAUGGCAGGAGGGGAGAGGA   423 Target Full Sequence	2.5	Zea mays clone 210405 LIM1 protein precursor, mRNA, complete cds	NA	coding protein	psRNATarget
EU963954.1	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   ***||||||*||||||||||| targets:411   GGAUGGCAGGAGGGGAGAGGA   431 Target Full Sequence	2.5	Zea mays clone 274529 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
X67323.1	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   ***||||||*||||||||||| targets:412   GGAUGGCAGGAGGGGAGAGGA   432 Target Full Sequence	2.5	Z.mays MFS14 mRNA	NA	coding protein	psRNATarget
EU970114.1	ncRNA:21   AGCACCGUCGUCCCCUCUCCU   1   ***||||||*||||||||||| targets:509   GGAUGGCAGGAGGGGAGAGGA   529 Target Full Sequence	2.5	Zea mays clone 339888 mRNA sequence	NA	coding protein	psRNATarget