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BaseInfo

ncRNA ID	novel_zma_miR10063
Species	Zea mays
Class	miRNA
Genome position	Chr10:90636299-90636501 [+]
Reference genome	RefGen_v4
Source	SRR5099742
Length	20
Mature sequence(if miRNA)	1 - AUAAUAUCAUAUGUAGAGGC - 20
Stem-loop(if miRNA)	--AUA              G                                  C  U   A      A                        -     CUC      AUAUCAUAUGUAGA GCUGUGAUAAAAAUUUGAGAAAGUUUCGAGAAAG UG GAC UACUAU UGUAGAAACCUAGGAGAACUACAU UGAAA   U      |||||||||||||| |||||||||||||||||||||||||||||||||| || ||| |||||| |||||||||||||||||||||||| |||||      UAUAGUAUAUAUCU CGACACUAUUUUUAAACUCUUUCAAAGCUCUUUC AC CUG AUGAUA ACAUCUUUGGAUCCUCUUGAUGUG ACUUU   A AUUAC              A                                  A  U   C      C                        U     AGC
Stem-loop sequence	AUAAUAUCAUAUGUAGAGGCUGUGAUAAAAAUUUGAGAAAGUUUCGAGAAAGCUGUGACAUACUAUAUGUAGAAACCUAGGAGAACUACAUUGAAACUCUACGAUUUCAUGUGUAGUUCUCCUAGGUUUCUACACAUAGUACGUCUCAACUUUCUCGAAACUUUCUCAAAUUUUUAUCACAGCAUCUAUAUAUGAUAUCAUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163670.1	ncRNA:20   CGGAGAUGUAUACUAUAAUA   1   |||||||||||||||||*|| targets:208   GCCUCUACAUAUGAUAUCAU   227 Target Full Sequence	1.5	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:20   CGGAGAUGUAUACUAUAAUA   1   |||||||||||||||||*|| targets:208   GCCUCUACAUAUGAUAUCAU   227 Target Full Sequence	1.5	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
HI403209.1	ncRNA:20   CGGAGAUGUAUACUAUAAUA   1   |||||||||||||||||*|| targets:208   GCCUCUACAUAUGAUAUCAU   227 Target Full Sequence	1.5	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
EZ089840.1	ncRNA:20   CGGAGAUGUAUACUAUAAUA   1   |||||||||||||||||*|| targets:4   GCCUCUACAUAUGAUAUCAU   23 Target Full Sequence	1.5	TSA: Zea mays contig25486, mRNA sequence	NA	coding protein	psRNATarget
XM_020546375.1	ncRNA:20   CGGAGAUGUAUACUAUAAUA   1   ***||||||||||||||||| targets:1801   AAGUCUACAUAUGAUAUUAU   1820 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear cap-binding protein subunit 1 (LOC100384700), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657372.2	ncRNA:20   CGGAGAUGUAUACUAUAAUA   1   ***||||||||||||||||| targets:1672   AAGUCUACAUAUGAUAUUAU   1691 Target Full Sequence	2.0	PREDICTED: Zea mays nuclear cap-binding protein subunit 1 (LOC100384700), transcript variant X2, mRNA	NA	coding protein	psRNATarget
KM399006.1	ncRNA:20   CGGAGAUGUAUACUAUAAUA   1   ***||||||||||||||||| targets:1381   AAGUCUACAUAUGAUAUUAU   1400 Target Full Sequence	2.0	Zea mays ABH1 mRNA, partial cds	NA	coding protein	psRNATarget
EZ077420.1	ncRNA:20   CGGAGAUGUAUACUAUAAUA   1   ***||||||||||||||||| targets:130   AAGUCUACAUAUGAUAUUAU   149 Target Full Sequence	2.0	TSA: Zea mays contig13057, mRNA sequence	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:20   CGGAGAUGUAUACUAUAAUA   1   *|||*||||||||||||*|| targets:202   ACCUGUACAUAUGAUAUCAU   221 Target Full Sequence	2.5	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget
JB163681.1	ncRNA:20   CGGAGAUGUAUACUAUAAUA   1   *|||*||||||||||||*|| targets:202   ACCUGUACAUAUGAUAUCAU   221 Target Full Sequence	2.5	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
HI403220.1	ncRNA:20   CGGAGAUGUAUACUAUAAUA   1   *|||*||||||||||||*|| targets:202   ACCUGUACAUAUGAUAUCAU   221 Target Full Sequence	2.5	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
EU957830.1	ncRNA:20   CGGAGAUGUAUACUAUAAUA   1   ***|*||||||||||||||| targets:2302   UGAUAUACAUAUGAUAUUAU   2321 Target Full Sequence	3.0	Zea mays clone 1624922 mRNA sequence	NA	coding protein	psRNATarget
NM_001323613.1	ncRNA:20   CGGAGAUGUAUACUAUAAUA   1   ***|*||||||||||||||| targets:2175   UGAUAUACAUAUGAUAUUAU   2194 Target Full Sequence	3.0	Zea mays lysine-specific histone demethylase 1 (LOC101027113), transcript variant 1, mRNA	NA	coding protein	psRNATarget
EU957883.1	ncRNA:20   CGGAGAUGUAUACUAUAAUA   1   ***|*||||||||||||||| targets:1968   UGAUAUACAUAUGAUAUUAU   1987 Target Full Sequence	3.0	Zea mays clone 1629499 lysine-specific histone demethylase 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279546.1	ncRNA:20   CGGAGAUGUAUACUAUAAUA   1   ***|*||||||||||||||| targets:1968   UGAUAUACAUAUGAUAUUAU   1987 Target Full Sequence	3.0	Zea mays lysine-specific histone demethylase 1 (LOC101027113), mRNA	NA	coding protein	psRNATarget