Search result

BaseInfo

ncRNA ID	novel_zma_miR10057
Species	Zea mays
Class	miRNA
Genome position	Chr5:222165947-222166132 [+]
Reference genome	RefGen_v4
Source	SRR5099742
Length	22
Mature sequence(if miRNA)	165 - CUUGCUGGUCCUCUCUAAGGUU - 186
Stem-loop(if miRNA)	-UCACG    U        U   --    UU  AUAAUCUCCUUAUAU    AUCCAUACCAAGUCUAUCGCAAUCCGAGUACAGAUGCAUCCUGGGCAU       GGGG GGACUAGU AGG  UUGG  AG               UUCC                                                C       |||| |||||||| |||  ||||  ||               ||||                                                C       UCUC CCUGGUCG UCC  AACC  UU               CGAC                                                A UUGGAA    U        U   CG    CU  --------------C    UGAGUCGACGUUAAGGUAGAACCCAAGCUCCUGGUCAGACGUGAUUUU
Stem-loop sequence	UCACGGGGGUGGACUAGUUAGGUUGGUUAGAUAAUCUCCUUAUAUUUCCAUCCAUACCAAGUCUAUCGCAAUCCGAGUACAGAUGCAUCCUGGGCAUCCAUUUUAGUGCAGACUGGUCCUCGAACCCAAGAUGGAAUUGCAGCUGAGUCAGCCUUUCCCAAGCCCUUGCUGGUCCUCUCUAAGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT088142.1	ncRNA:22   UUGGAAUCUCUCCUGGUCGUUC   1   ||||||=||||||||||||||| targets:898   AACCUUGGAGAGGACCAGCAAG   919 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0033O24 mRNA, complete cds	NA	coding protein	psRNATarget
BT086630.1	ncRNA:22   UUGGAAUCUCUCCUGGUCGUUC   1   *|||||=||||||||||||||| targets:175   UACCUUGGAGAGGACCAGCAAG   196 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFa0066I05 mRNA, complete cds	NA	coding protein	psRNATarget
BT036284.1	ncRNA:22   UUGGAAUCUCUCCUGGUCGUUC   1   *|||||=||||||||||||||| targets:323   UACCUUGGAGAGGACCAGCAAG   344 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0104O09 mRNA, complete cds	NA	coding protein	psRNATarget
EU972514.1	ncRNA:22   UUGGAAUCUCUCCUGGUCGUUC   1   *|||||=||||||||||||||| targets:579   UACCUUGGAGAGGACCAGCAAG   600 Target Full Sequence	1.0	Zea mays clone 382551 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ103264.1	ncRNA:22   UUGGAAUCUCUCCUGGUCGUUC   1   *|||||=|||||*||||||||| targets:30   UACCUUGGAGAGAACCAGCAAG   51 Target Full Sequence	2.5	TSA: Zea mays contig38921, mRNA sequence	NA	coding protein	psRNATarget