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BaseInfo

ncRNA ID novel_zma_miR10055
Species Zea mays
Class miRNA
Genome position Chr5:212575709-212575832 [+]
Reference genome RefGen_v4
Source SRR5099742
Length 21
Mature sequence(if miRNA) 1 - CUUGUUUGAGAUCAAAGGUAA - 21
Stem-loop(if miRNA) --        A  U      -    GA  U        U     -AG      C     C   A
  CUUGUUUG GA CAAAGG UAAU  AG GGAUUGAG GGGCU   AAUCCC UACUA UUA U
  |||||||| || |||||| ||||  || |||||||| |||||   |||||| ||||| |||
  GAACAAAC CU GUUUCC AUUA  UC CCUAACUC CCUGG   UUAGGG AUGAU AGU U
CC        C  -      C    AC  C        -     AUA      A     A   U
Stem-loop sequence CUUGUUUGAGAUCAAAGGUAAUGAAGUGGAUUGAGUGGGCUAGAAUCCCCUACUACUUAAUUUUGAAUAGUAAGGGAUUAUAGGUCCCUCAAUCCCCUCAAUUACCCUUUGUCCCAAACAAGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT018962.1
ncRNA:21   AAUGGAAACUAGAGUUUGUUC   1
  *|||||*||||||||*|||||
targets:797   AUACCUAUGAUCUCAUACAAG   817

2.5 Zea mays clone Contig296.F mRNA sequence NA coding protein psRNATarget