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BaseInfo

ncRNA ID	novel_zma_miR10048
Species	Zea mays
Class	miRNA
Genome position	Chr5:155949922-155950073 [+]
Reference genome	RefGen_v4
Source	SRR5099742
Length	25
Mature sequence(if miRNA)	1 - UUCCAUGCUCUACUCUGGUCCGAGA - 25
Stem-loop(if miRNA)	--                         C        A   U                      CAG     UC   CU   UUCCAUGCUCUACUCUGGUCCGAGA AGAGUUUC GCG CACCUCCCUGUUGUUCUCCGGA   UACAC  UCC  G   ||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||   |||||  |||   AAGGUACGAGAUGAGGCUAGGCUCU UCUUAAAG CGU GUGGAGGGGCGACAAGAGGCCU   AUGUG  AGG  U CA                         A        C   C                      ---     -C   AC
Stem-loop sequence	UUCCAUGCUCUACUCUGGUCCGAGACAGAGUUUCAGCGUCACCUCCCUGUUGUUCUCCGGACAGUACACUCUCCCUGUCAGGACGUGUAUCCGGAGAACAGCGGGGAGGUGCUGCCGAAAUUCUAUCUCGGAUCGGAGUAGAGCAUGGAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008672589.2	ncRNA:25   AGAGC--CUGGUCUCAUCUCGUACCUU   1   *||=|--|||||||||=|||||||||= targets:1387   ACUUGACGACCAGAGUGGAGCAUGGAG   1413 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648084 (LOC103648084), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020548683.1	ncRNA:25   AGAGC--CUGGUCUCAUCUCGUACCUU   1   *||=|--|||||||||=|||||||||= targets:1448   ACUUGACGACCAGAGUGGAGCAUGGAG   1474 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648084 (LOC103648084), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008672590.2	ncRNA:25   AGAGC--CUGGUCUCAUCUCGUACCUU   1   *||=|--|||||||||=|||||||||= targets:1377   ACUUGACGACCAGAGUGGAGCAUGGAG   1403 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648085 (LOC103648085), transcript variant X1, mRNA	NA	coding protein	psRNATarget