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BaseInfo

ncRNA ID novel_zma_miR10047
Species Zea mays
Class miRNA
Genome position Chr5:13535211-13535394 [+]
Reference genome RefGen_v4
Source SRR5099742
Length 23
Mature sequence(if miRNA) 1 - AAAAAAUUGUUGCAGCCCAGCUG - 23
Stem-loop(if miRNA) --AAAAAA            A   G  AAC    C     A          C     A   U       C     A    U   CCA      UU
        UUGUUGCAGCCC GCU CA   CAGG UGUUU CAGCCUCUCA AAAAA GAG AUAGGCC CACCU CAGG CCA   AAUACG  U
        |||||||||||| ||| ||   |||| ||||| |||||||||| ||||| ||| ||||||| ||||| |||| |||   ||||||  U
        AACAACGUCGGG UGA GU   GUCC ACAAA GUCGGGGAGU UUUUU CUC UAUCUGG GUGGA GUCU GGU   UUGUGU  A
UUUUUAAA            C   -  ---    A     C          -     C   C       U     C    -   -UA      UG
Stem-loop sequence AAAAAAUUGUUGCAGCCCAGCUGCAAACCAGGCUGUUUACAGCCUCUCACAAAAAAGAGUAUAGGCCCCACCUACAGGUCCACCAAAUACGUUUUAGUUGUGUUAUUGGUCUGCAGGUGUGGUCUAUCCUCCUUUUUUGAGGGGCUGCAAACAACCUGUGAGUCGGGCUGCAACAAAAAUUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001137162.1
ncRNA:23   GUCGACCCGACGUUGUUAAAAAA   1
  |||-|*|||||||*|||||||||
targets:2211   CAG-UCGGCUGCACCAAUUUUUU   2232

2.5 Zea mays uncharacterized LOC100191734 (LOC100191734), mRNA NA coding protein psRNATarget
BT033928.1
ncRNA:23   GUCGACCCGACGUUGUUAAAAAA   1
  |||-|*|||||||*|||||||||
targets:2211   CAG-UCGGCUGCACCAAUUUUUU   2232

2.5 Zea mays full-length cDNA clone ZM_BFc0036M23 mRNA, complete cds NA coding protein psRNATarget
XM_008682759.2
ncRNA:23   GUCGACCCGACGUUGUUAAAAAA   1
  |||-|*|||||||*|||||||||
targets:2649   CAG-UCGGCUGCACCAAUUUUUU   2670

2.5 PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008682758.2
ncRNA:23   GUCGACCCGACGUUGUUAAAAAA   1
  |||-|*|||||||*|||||||||
targets:2652   CAG-UCGGCUGCACCAAUUUUUU   2673

2.5 PREDICTED: Zea mays uncharacterized LOC100191734 (LOC100191734), transcript variant X1, mRNA NA coding protein psRNATarget
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