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BaseInfo

ncRNA ID	novel_zma_miR10035
Species	Zea mays
Class	miRNA
Genome position	Chr4:86630724-86630863 [+]
Reference genome	RefGen_v4
Source	SRR5099742
Length	24
Mature sequence(if miRNA)	117 - AUCGGACUGUCCGGUGUGGCACCA - 140
Stem-loop(if miRNA)	--    GC        U         -----   ----AG  GAUCAACGGCUCGUUGCGCGCCAACGGUCGAC   GUGU  CACCGGAC GUCCGGUGA     GAC      CG                                U   ||||  |||||||| |||||||||     |||      ||                                A   CACG  GUGGCCUG CAGGCUACU     CUG      CG                                C AC    GU        U         GGAGA   AAACGA  AGACUGAAGACGCGCCUUGACAAGUAGAGACG
Stem-loop sequence	GUGUGCCACCGGACUGUCCGGUGAGACAGCGGAUCAACGGCUCGUUGCGCGCCAACGGUCGACUACGCAGAGAUGAACAGUUCCGCGCAGAAGUCAGAGCAGCAAAGUCAGAGGUCAUCGGACUGUCCGGUGUGGCACCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU940845.1	ncRNA:24   ACCACGGUGUGGCCUGUCAGGCUA   1   |||||||*||||||||||||||=| targets:1469   UGGUGCCUCACCGGACAGUCCGGU   1492 Target Full Sequence	2.5	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:24   ACCACGGUGUGGCCUGUCAGGCUA   1   *||||*||||||||||||||||=| targets:94   CGGUGGCACACCGGACAGUCCGGU   117 Target Full Sequence	2.5	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   ACCACGGUGUGGCCUGUCAGGCUA   1   *||||*||||||||||||||||=| targets:797   CGGUGGCACACCGGACAGUCCGGU   820 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   ACCACGGUGUGGCCUGUCAGGCUA   1   *|*||*||||||||||||||||=| targets:695   CGCUGGCACACCGGACAGUCCGGU   718 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   ACCACGGUGUGGCCUGUCAGGCUA   1   *||||||*||||||||||||||=| targets:353   CGGUGCCUCACCGGACAGUCCGGU   376 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   ACCACGGUGUGGCCUGUCAGGCUA   1   *|||||**|||||||||||||||| targets:816   CGGUGCACCACCGGACAGUCCGAU   839 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   ACCACGGUGUGGCCUGUCAGGCUA   1   *|||||**|||||||||||||||| targets:816   CGGUGCACCACCGGACAGUCCGAU   839 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   ACCACGGUGUGGCCUGUCAGGCUA   1   ***||*||||||||||||||||=| targets:10   CACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   ACCACGGUGUGGCCUGUCAGGCUA   1   ***||*||||||||||||||||=| targets:10   CACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   ACCACGGUGUGGCCUGUCAGGCUA   1   ***||*||||||||||||||||=| targets:10   CACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget