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BaseInfo

ncRNA ID	novel_zma_miR10034
Species	Zea mays
Class	miRNA
Genome position	Chr4:6479991-6480058 [+]
Reference genome	RefGen_v4
Source	SRR5099742;SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AUUUGGUGAUCGGGGAUUCUGAAG - 24
Stem-loop(if miRNA)	--                   UG  GAGA   A G   AUUUGGUGAUCGGGGAUUC  AA    UCC U A   |||||||||||||||||||  ||    ||| |   UAAACCACUAGCCCCUAGG  UU    GGG G G AU                   GU  --AG   A A
Stem-loop sequence	AUUUGGUGAUCGGGGAUUCUGAAGAGAUCCAUGAGAGAGGGGAUUUGGGAUCCCCGAUCACCAAAUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ056613.1	ncRNA:24   GAAGUCUUAGGGGCUAGUGGUUUA   1   |*||=|=|||||||=||||||||| targets:152   CCUCGGGAUCCCCGGUCACCAAAU   175 Target Full Sequence	2.5	TSA: Zea mays contig57735, mRNA sequence	NA	coding protein	psRNATarget
NM_001196706.1	ncRNA:24   GAAGUCUUAGGGGCUAGUGGUUUA   1   |*||=|=|||||||=||||||||| targets:859   CCUCGGGAUCCCCGGUCACCAAAU   882 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100502229), mRNA	NA	coding protein	psRNATarget
BT087480.1	ncRNA:24   GAAGUCUUAGGGGCUAGUGGUUUA   1   |*||=|=|||||||=||||||||| targets:859   CCUCGGGAUCCCCGGUCACCAAAU   882 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0089I03 mRNA, complete cds	NA	coding protein	psRNATarget
EU967725.1	ncRNA:24   GAAGUCUUAGGGGCUAGUGGUUUA   1   |*||=|=|||||||=||||||||| targets:1125   CCUCGGGAUCCCCGGUCACCAAAU   1148 Target Full Sequence	2.5	Zea mays clone 305590 mRNA sequence	NA	coding protein	psRNATarget
BT037942.1	ncRNA:24   GAAGUCUUAGGGGCUAGUGGUUUA   1   |*||=|=|||||||=||||||||| targets:46   CCUCGGGAUCCCCGGUCACCAAAU   69 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0203O02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143476.1	ncRNA:24   GAAGUCUUAGGGGCUAGUGGUUUA   1   |*||=|=|||||||=||||||||| targets:46   CCUCGGGAUCCCCGGUCACCAAAU   69 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100217107), mRNA	NA	coding protein	psRNATarget
BT084817.1	ncRNA:24   GAAGUCUUAGGGGCUAGUGGUUUA   1   |*||=|=|||||||=||||||||| targets:140   CCUCGGGAUCCCCGGUCACCAAAU   163 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0186I10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008662311.2	ncRNA:24   GAAGUCUUAGGGGCUAGUGGUUUA   1   |*||=|=|||||||=||||||||| targets:1086   CCUCGGGAUCCCCGGUCACCAAAU   1109 Target Full Sequence	2.5	PREDICTED: Zea mays EPIDERMAL PATTERNING FACTOR-like protein 4 (LOC103639579), mRNA	NA	coding protein	psRNATarget
XM_008671854.2	ncRNA:24   GAAGUCUUAGGGGCUAGUGGUUUA   1   |*||=|=|||||||=||||||||| targets:63   CCUCGGGAUCCCCGGUCACCAAAU   86 Target Full Sequence	2.5	PREDICTED: Zea mays alpha-glucosidase 2 (LOC103647311), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB170445.1	ncRNA:24   GAAG-UCUUAGGGGCUAGUGGUUUA   1   ||*|-||||||||=||||||||||| targets:105   CUACGAGAAUCCCUGAUCACCAAAU   129 Target Full Sequence	1.5	Sequence 8109 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242114.1	ncRNA:24   GAAG-UCUUAGGGGCUAGUGGUUUA   1   ||*|-||||||||=||||||||||| targets:105   CUACGAGAAUCCCUGAUCACCAAAU   129 Target Full Sequence	1.5	Sequence 8109 from Patent EP2985353	NA	coding protein	psRNATarget
HI409984.1	ncRNA:24   GAAG-UCUUAGGGGCUAGUGGUUUA   1   ||*|-||||||||=||||||||||| targets:105   CUACGAGAAUCCCUGAUCACCAAAU   129 Target Full Sequence	1.5	Sequence 8109 from Patent EP2074227	NA	coding protein	psRNATarget