Search result

BaseInfo

ncRNA ID	novel_zma_miR10024
Species	Zea mays
Class	miRNA
Genome position	Chr10:6098901-6099018 [+]
Reference genome	RefGen_v4
Source	SRR5099742
Length	21
Mature sequence(if miRNA)	1 - CGAGAUCCUAUCACCACCCGG - 21
Stem-loop(if miRNA)	--         AU              AGAG    AGA G G  G    C  C    AUG   CGAGAUCCU  CACCACCCGGUGGC    GGGC   G C GC GCGG GG GGAC   A   |||||||||  ||||||||||||||    ||||   | | || |||| || ||||   C   GCUCUAGGA  GUGGUGGGCCGCCG    CCCG   U G CG CGUC CC CCUG   C GG         CC              ---G    AGG G A  A    C  A    CCA
Stem-loop sequence	CGAGAUCCUAUCACCACCCGGUGGCAGAGGGGCAGAGGCGGCGGCGGCGGCGGACAUGACCACCGUCCACCCCUGCAGCAGGUGGAGCCCGGCCGCCGGGUGGUGCCAGGAUCUCGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU966852.1	ncRNA:21   GGCCCACCACUAUCCUAGAGC   1   ||||||||||||||||||||| targets:1065   CCGGGUGGUGAUAGGAUCUCG   1085 Target Full Sequence	0.0	Zea mays clone 297736 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU964402.1	ncRNA:21   GGCCCACCACUAUCCUAGAGC   1   ||||||||||||||||||||| targets:1101   CCGGGUGGUGAUAGGAUCUCG   1121 Target Full Sequence	0.0	Zea mays clone 278622 mRNA sequence	NA	coding protein	psRNATarget
XM_008664259.2	ncRNA:21   GGCCCACCACUAUCCUAGAGC   1   ||||||||||||||||||||| targets:1785   CCGGGUGGUGAUAGGAUCUCG   1805 Target Full Sequence	0.0	PREDICTED: Zea mays transcription repressor OFP8 (LOC103640776), mRNA	NA	coding protein	psRNATarget