Search result

BaseInfo

ncRNA ID	novel_zma_miR10017
Species	Zea mays
Class	miRNA
Genome position	Chr4:71987349-71987484 [-]
Reference genome	RefGen_v4
Source	SRR5099742
Length	23
Mature sequence(if miRNA)	114 - GAGAAAUGGACUCAUGAUGCACC - 136
Stem-loop(if miRNA)	--   A        C             C  UG    U         -   C               U   GAG AAUGGACU AUGAUGCACCACC CA  UUGG UGUAGUGAU CCU AAACCAAACACCCUC U   ||| |||||||| ||||||||||||| ||  |||| ||||||||| ||| ||||||||||||||| A   CUC UUAUUUGA UACUACGUGGUGG GU  AACC ACAUCACUA GGA UUUGGUUUGUGGGGG U AA   C        A             A  UA    U         A   A               A
Stem-loop sequence	GAGAAAUGGACUCAUGAUGCACCACCCCAUGUUGGUUGUAGUGAUCCUCAAACCAAACACCCUCUUAUAGGGGGUGUUUGGUUUAAGGAAUCACUACAUCCAAAUUGAGGUGGUGCAUCAUAAGUUUAUUCCUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ095024.1	ncRNA:23   CCACGUAGUACUCAGGUAAAGAG   1   |||||||||||||||||||*||| targets:75   GGUGCAUCAUGAGUCCAUUACUC   97 Target Full Sequence	1.5	TSA: Zea mays contig30676, mRNA sequence	NA	coding protein	psRNATarget
BT040813.1	ncRNA:23   CCACGUAGUACUCAGGUAAAGAG   1   |||||||||||||||||||*||| targets:1228   GGUGCAUCAUGAGUCCAUUACUC   1250 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0132I23 mRNA, complete cds	NA	coding protein	psRNATarget
EU971066.1	ncRNA:23   CCACGUAGUACUCAGGUAAAGAG   1   |||*||||||||||||||||||| targets:1511   GGUACAUCAUGAGUCCAUUUCUC   1533 Target Full Sequence	0.0	Zea mays clone 356857 glucan endo-1,3-beta-glucosidase precursor, mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158057.1	ncRNA:23   CCACGUAGUACUCAGGUAAAGAG   1   |||*||||||||||||||||||| targets:1511   GGUACAUCAUGAGUCCAUUUCUC   1533 Target Full Sequence	0.0	Zea mays uncharacterized LOC100285163 (umc1419), mRNA	NA	coding protein	psRNATarget
BT087554.1	ncRNA:23   CCACGUAGUACUCAGGUAAAGAG   1   *****|||||||||=|||||||| targets:1103   AAACGAUCAUGAGUUCAUUUCUC   1125 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108B24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061443.1	ncRNA:23   CCACGUAGUACUCAGGUAAAGAG   1   *****|||||||||=|||||||| targets:1234   AAACGAUCAUGAGUUCAUUUCUC   1256 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0146P14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678624.2	ncRNA:23   CCACGUAGUACUCAGGUAAAGAG   1   *****|||||||||=|||||||| targets:1239   AAACGAUCAUGAGUUCAUUUCUC   1261 Target Full Sequence	2.5	PREDICTED: Zea mays ADP-ribosylation factor (LOC100282799), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678615.2	ncRNA:23   CCACGUAGUACUCAGGUAAAGAG   1   *****|||||||||=|||||||| targets:1289   AAACGAUCAUGAGUUCAUUUCUC   1311 Target Full Sequence	2.5	PREDICTED: Zea mays ADP-ribosylation factor (LOC100282799), transcript variant X1, mRNA	NA	coding protein	psRNATarget