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BaseInfo

ncRNA ID novel_zma_miR10015
Species Zea mays
Class miRNA
Genome position Chr10:55143418-55143531 [+]
Reference genome RefGen_v4
Source SRR5099742
Length 24
Mature sequence(if miRNA) 1 - UUGGUUUGCUGCCUAACUUGCCAC - 24
Stem-loop(if miRNA) --        C  C    -CU  C             -------------        - G  CG
  UUGGUUUG UG CUAA   UG CACACUUUGCCUA             AGGUUAGU C UC  A
  |||||||| || ||||   || |||||||||||||             |||||||| | ||
  AACCAAGC AC GAUU   AC GUGUGAAACGGAU             UCCAAUCA G AG  A
UA        -  U    AAC  A             UGAAAAGACCAAU        U A  UU
Stem-loop sequence UUGGUUUGCUGCCUAACUUGCCACACUUUGCCUAAGGUUAGUCGUCCGAAUUGAAGUACUAACCUUAACCAGAAAAGUUAGGCAAAGUGUGACACAAUUAGUCACGAACCAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163897.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  ||||||||||||||||||||||||
targets:98   GUGGCAAGUUAGGCAGCAAACCAA   121

0.0 Sequence 1561 from Patent EP2559767 NA coding protein psRNATarget
JB163838.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  ||||||||||||||||||||||||
targets:98   GUGGCAAGUUAGGCAGCAAACCAA   121

0.0 Sequence 1502 from Patent EP2559767 NA coding protein psRNATarget
LQ235507.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  ||||||||||||||||||||||||
targets:98   GUGGCAAGUUAGGCAGCAAACCAA   121

0.0 Sequence 1502 from Patent EP2985353 NA coding protein psRNATarget
LQ235555.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  ||||||||||||||||||||||||
targets:98   GUGGCAAGUUAGGCAGCAAACCAA   121

0.0 Sequence 1550 from Patent EP2985353 NA coding protein psRNATarget
JB163886.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  ||||||||||||||||||||||||
targets:98   GUGGCAAGUUAGGCAGCAAACCAA   121

0.0 Sequence 1550 from Patent EP2559767 NA coding protein psRNATarget
HI403425.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  ||||||||||||||||||||||||
targets:98   GUGGCAAGUUAGGCAGCAAACCAA   121

0.0 Sequence 1550 from Patent EP2074227 NA coding protein psRNATarget
LQ235566.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  ||||||||||||||||||||||||
targets:98   GUGGCAAGUUAGGCAGCAAACCAA   121

0.0 Sequence 1561 from Patent EP2985353 NA coding protein psRNATarget
HI403436.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  ||||||||||||||||||||||||
targets:98   GUGGCAAGUUAGGCAGCAAACCAA   121

0.0 Sequence 1561 from Patent EP2074227 NA coding protein psRNATarget
HI403377.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  ||||||||||||||||||||||||
targets:98   GUGGCAAGUUAGGCAGCAAACCAA   121

0.0 Sequence 1502 from Patent EP2074227 NA coding protein psRNATarget
LQ235427.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  |||||||||||||||||=||||||
targets:98   GUGGCAAGUUAGGCAGCGAACCAA   121

1.5 Sequence 1422 from Patent EP2985353 NA coding protein psRNATarget
HI403297.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  |||||||||||||||||=||||||
targets:98   GUGGCAAGUUAGGCAGCGAACCAA   121

1.5 Sequence 1422 from Patent EP2074227 NA coding protein psRNATarget
JB163758.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  |||||||||||||||||=||||||
targets:98   GUGGCAAGUUAGGCAGCGAACCAA   121

1.5 Sequence 1422 from Patent EP2559767 NA coding protein psRNATarget
EZ052567.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  |||||||||||*||||||||||||
targets:567   GUGGCAAGUUAUGCAGCAAACCAA   590

1.5 TSA: Zea mays contig53688, mRNA sequence NA coding protein psRNATarget
HI403441.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  *|||||||||||||||*|||||||
targets:99   AUGGCAAGUUAGGCAGGAAACCAA   122

1.5 Sequence 1566 from Patent EP2074227 NA coding protein psRNATarget
LQ235571.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  *|||||||||||||||*|||||||
targets:99   AUGGCAAGUUAGGCAGGAAACCAA   122

1.5 Sequence 1566 from Patent EP2985353 NA coding protein psRNATarget
JB163902.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  *|||||||||||||||*|||||||
targets:99   AUGGCAAGUUAGGCAGGAAACCAA   122

1.5 Sequence 1566 from Patent EP2559767 NA coding protein psRNATarget
XM_008678546.2
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  *|*|||||||||||||||||||||
targets:515   AUUGCAAGUUAGGCAGCAAACCAA   538

0.0 PREDICTED: Zea mays glycine-rich protein (LOC100272819), transcript variant X2, mRNA NA coding protein psRNATarget
EU959044.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  |||||||*|||*||||||||||||
targets:501   GUGGCAAUUUAUGCAGCAAACCAA   524

2.5 Zea mays clone 209607 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
AY110609.1
ncRNA:21   CGUUCAAUCCGUCGUUUGGUU   1
  *=|||||||||||||||||||
targets:1   AUAAGUUAGGCAGCAAACCAA   21

0.0 Zea mays CL49281_1 mRNA sequence NA coding protein psRNATarget
NM_001328519.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  ||||*||*|||*||||||||||||
targets:514   GUGGAAAUUUAUGCAGCAAACCAA   537

2.5 Zea mays hypothetical protein (pco113764), mRNA NA coding protein psRNATarget
XM_020541995.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  ||||*||*|||*||||||||||||
targets:515   GUGGAAAUUUAUGCAGCAAACCAA   538

2.5 PREDICTED: Zea mays hypothetical protein (pco113764), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008660020.2
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  **|**|||||||*|||||||||||
targets:3532   CAGAAAAGUUAGUCAGCAAACCAA   3555

1.5 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008660021.2
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  **|**|||||||*|||||||||||
targets:3660   CAGAAAAGUUAGUCAGCAAACCAA   3683

1.5 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020543539.1
ncRNA:24   CACCGUUCAAUCCGUCGUUUGGUU   1
  **|**|||||||*|||||||||||
targets:3667   CAGAAAAGUUAGUCAGCAAACCAA   3690

1.5 PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA NA coding protein psRNATarget
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