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BaseInfo

ncRNA ID	novel_zma_miR10006
Species	Zea mays
Class	miRNA
Genome position	Chr5:59964899-59964967 [+]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	46 - UCGAGGACGCGGCUAGAGAUUCGG - 69
Stem-loop(if miRNA)	--    UC   CG     - G     UUG   C  UG   GGAU  CUC  GCCGC U CUCGG   GUC CA  G   ||||  |||  ||||| | |||||   ||| ||  A   CUUA  GAG  CGGCG A GAGCU   UAG GU  U GG    --   AU     C G     ---   U  CG
Stem-loop sequence	GGAUUCCUCCGGCCGCUGCUCGGUUGGUCCCAUGGAUGCUGUGAUUCGAGGACGCGGCUAGAGAUUCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008646924.2	ncRNA:24   GGCUUAGAGAUCGGCGCAGGAGCU   1   |**||||||*|||||||||||*|| targets:4569   CAAAAUCUCGAGCCGCGUCCUGGA   4592 Target Full Sequence	2.5	PREDICTED: Zea mays Protein transport protein SEC16B-like protein (LOC103626511), mRNA	NA	coding protein	psRNATarget
EU953936.1	ncRNA:24   GGCUUAGAGAUCGGCGCAGGAGCU   1   |||**||||**||||||||||||| targets:152   CCGCCUCUCCUGCCGCGUCCUCGA   175 Target Full Sequence	2.0	Zea mays clone 1449830 mRNA sequence	NA	coding protein	psRNATarget
NM_001143272.1	ncRNA:24   GGCUUAGAGAUCGGCGCAGGAGCU   1   |||**||||**||||||||||||| targets:189   CCGCCUCUCCUGCCGCGUCCUCGA   212 Target Full Sequence	2.0	Zea mays uncharacterized LOC100216885 (si486042a10), mRNA	NA	coding protein	psRNATarget
BT037518.1	ncRNA:24   GGCUUAGAGAUCGGCGCAGGAGCU   1   |||**||||**||||||||||||| targets:189   CCGCCUCUCCUGCCGCGUCCUCGA   212 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0175O04 mRNA, complete cds	NA	coding protein	psRNATarget
BT017167.1	ncRNA:24   GGCUUAGAGAUCGGCGCAGGAGCU   1   |||**||||**||||||||||||| targets:181   CCGCCUCUCCUGCCGCGUCCUCGA   204 Target Full Sequence	2.0	Zea mays clone EL01N0368H01.c mRNA sequence	NA	coding protein	psRNATarget
XM_008674048.2	ncRNA:24   GGCUUAGAGAUCGGCGCAGGAGCU   1   |||**||||**||||||||||||| targets:269   CCGCCUCUCCUGCCGCGUCCUCGA   292 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100216885 (si486042a10), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674047.2	ncRNA:24   GGCUUAGAGAUCGGCGCAGGAGCU   1   |||**||||**||||||||||||| targets:249   CCGCCUCUCCUGCCGCGUCCUCGA   272 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100216885 (si486042a10), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674046.2	ncRNA:24   GGCUUAGAGAUCGGCGCAGGAGCU   1   |||**||||**||||||||||||| targets:251   CCGCCUCUCCUGCCGCGUCCUCGA   274 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100216885 (si486042a10), transcript variant X1, mRNA	NA	coding protein	psRNATarget