Search result

BaseInfo

ncRNA ID	novel_zma_miR10005
Species	Zea mays
Class	miRNA
Genome position	Chr4:156034162-156034235 [-]
Reference genome	RefGen_v4
Source	SRR5099742
Length	24
Mature sequence(if miRNA)	1 - AAAGCUAACUUCUUUGCCGAGUGU - 24
Stem-loop(if miRNA)	--               AUU              GCC   ACUCGGCAAAGAAGU   CUUUGCCGAGUGCU   U   |||||||||||||||   ||||||||||||||   UGAGCCGUUUCUUCA   GAAACGGCUCACGG   G UG               AUC              AAG
Stem-loop sequence	ACUCGGCAAAGAAGUAUUCUUUGCCGAGUGCUGCCUGGAAGGCACUCGGCAAAGCUAACUUCUUUGCCGAGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167100.1	ncRNA:24   UGUGAGCCGUUUCUUCAAUCGAAA   1   |||||||||||||||||||*|||| targets:43   ACACUCGGCAAAGAAGUUACCUUU   66 Target Full Sequence	1.5	Sequence 4764 from Patent EP2559767	NA	coding protein	psRNATarget
HI406639.1	ncRNA:24   UGUGAGCCGUUUCUUCAAUCGAAA   1   |||||||||||||||||||*|||| targets:43   ACACUCGGCAAAGAAGUUACCUUU   66 Target Full Sequence	1.5	Sequence 4764 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238769.1	ncRNA:24   UGUGAGCCGUUUCUUCAAUCGAAA   1   |||||||||||||||||||*|||| targets:43   ACACUCGGCAAAGAAGUUACCUUU   66 Target Full Sequence	1.5	Sequence 4764 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008651647.2	ncRNA:24   UGUGAGCCGUUUCUUCAAUCGAAA   1   =||**||||||||||||*|||||| targets:1581   GCAGACGGCAAAGAAGUGAGCUUU   1604 Target Full Sequence	1.5	PREDICTED: Zea mays Beta-arabinofuranosyltransferase RAY1 (LOC103630599), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651643.2	ncRNA:24   UGUGAGCCGUUUCUUCAAUCGAAA   1   =||**||||||||||||*|||||| targets:1578   GCAGACGGCAAAGAAGUGAGCUUU   1601 Target Full Sequence	1.5	PREDICTED: Zea mays Beta-arabinofuranosyltransferase RAY1 (LOC103630599), transcript variant X1, mRNA	NA	coding protein	psRNATarget